Jatropha Genome Database

JcCA0307801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307801.10 + phase: 0 
         (510 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g123930.1 Histidyl-tRNA synthetase chr07_pseudomolecu...    75   1e-13
IMGA|Medtr5g099130.1 Histidyl-tRNA synthetase chr05_pseudomolecu...    54   3e-07

>IMGA|Medtr7g123930.1 Histidyl-tRNA synthetase
           chr07_pseudomolecule_IMGAG_V3 28948627-28948267 E
           EGN_Mt090430 20090702
          Length = 111

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/33 (90%), Positives = 33/33 (100%)

Query: 88  VQKIDVNPPKGTRDFPPEEMRLRNWLFHNFREV 120
           V+KIDVNPPKGTRDFPPEEMRLRNWLF+NF+EV
Sbjct: 79  VKKIDVNPPKGTRDFPPEEMRLRNWLFNNFKEV 111


>IMGA|Medtr5g099130.1 Histidyl-tRNA synthetase
           chr05_pseudomolecule_IMGAG_V3 39628475-39627558 E
           EGN_Mt090430 20090702
          Length = 119

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 323 GGAGEAVADLKQLFSLAENFGYSEWIQFDASVVRGLAYYTGIVFEGFDREG-KLRAICGG 381
            G+ +A+ DL+ LF   +N    + + FD S+ RGL YYTG++FE   + G ++ +I  G
Sbjct: 50  AGSVDALNDLEILFKALDNSNRLDKVVFDLSLARGLDYYTGVIFEAVFKGGAQVGSIAAG 109

Query: 382 GRYDRLL 388
           GRYD L+
Sbjct: 110 GRYDNLI 116