Jatropha Genome Database

JcCA0307751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307751.10 + phase: 0 /TE/partial
         (180 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g029040.1 LTRGag-pol-polymerase 3, related chr05_pseu...   183   5e-47
IMGA|Medtr7g123950.1 Retrotransposon gag protein chr07_pseudomol...    47   6e-06

>IMGA|Medtr5g029040.1 LTRGag-pol-polymerase 3, related
           chr05_pseudomolecule_IMGAG_V3 12052697-12051982 H
           EGN_Mt090430 20090702
          Length = 223

 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 86/132 (65%), Positives = 106/132 (80%)

Query: 16  SQLDATVLQWIYGTISVDLLNTILETDSTAQNAWDRLKGIFQDNKNSRALYLENQFSHVL 75
           S LDA V QWIY TIS+DLL+TIL+  +TAQ AW+RLK IF DNKNSRA+YLE QFS + 
Sbjct: 41  SCLDAIVKQWIYSTISIDLLHTILKPGATAQEAWNRLKDIFHDNKNSRAVYLEQQFSQIH 100

Query: 76  LDDFPNISAYCQELKMLSDQLSNVGAPVSNQRLVLQLIAGLNEAYDGVATIIQQSDPLPL 135
           +D++PN S+YCQ LK++++QL NVGAPVS  RLVL+L+ GL+  YD +ATIIQQ DPLP 
Sbjct: 101 MDNYPNASSYCQALKLIAEQLGNVGAPVSEDRLVLRLVTGLSSGYDSLATIIQQLDPLPS 160

Query: 136 FYEAXSKLILEE 147
           FY+A S L LEE
Sbjct: 161 FYKARSMLTLEE 172


>IMGA|Medtr7g123950.1 Retrotransposon gag protein
           chr07_pseudomolecule_IMGAG_V3 29015812-29013196 E
           EGN_Mt090430 20090702
          Length = 302

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 17/139 (12%)

Query: 11  DPRLR--SQLDATVLQWIYGTISVDLLNTILETDSTAQNAWDRLKGIFQDNKNSRALYLE 68
           DP+L    + +  VL WI  +I  D+  +++ +D TA   W  L   F     SR   + 
Sbjct: 88  DPKLPLWKRCNDLVLTWILHSIEPDIARSVIFSD-TAAAVWSDLHDRFSQGDESRIYQIR 146

Query: 69  NQFSHVLLDDFPNISAYCQELKMLSDQLSNVGAPVS-------------NQRLVLQLIAG 115
            + S         IS Y  +LK L D+L +   P++              +  V+Q + G
Sbjct: 147 QEISECRQGSL-LISDYYTKLKSLWDELGSYQEPITCSCDMLKKVAVREEKEKVMQFLMG 205

Query: 116 LNEAYDGVATIIQQSDPLP 134
           LNE+Y  V   I   +PLP
Sbjct: 206 LNESYSQVRGSILMMNPLP 224