Jatropha Genome Database

JcCA0307631.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307631.30 - phase: 0 
         (604 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g087270.1 Ferredoxin chr03_pseudomolecule_IMGAG_V3 20...  1051   0.0  

>IMGA|Medtr3g087270.1 Ferredoxin chr03_pseudomolecule_IMGAG_V3
           20700853-20708421 E EGN_Mt090430 20090702
          Length = 739

 Score = 1051 bits (2718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/604 (82%), Positives = 541/604 (89%)

Query: 1   MKIKTDTPVAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRS 60
           MKIKTDTP+AKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFT+MKRS
Sbjct: 136 MKIKTDTPIAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTDMKRS 195

Query: 61  VVDKNLGPLVKTVMTRCIQCTRCVRFATEIAGVQDLGMLGRGSGEEIGTYVEKLMTSELS 120
           VVDKNLGPLVKTVMTRCIQCTRCVRFA+E+AGVQDLGMLGRGSGEEIGTYVEKLMTSELS
Sbjct: 196 VVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELS 255

Query: 121 GNVIDICPVGALTSKPFAFKARNWELKGTESIDVSDAVGSNIRIDSRGPEVMRIIPRLNE 180
           GNVIDICPVGALTSKPFAFKARNWELK TE+IDV+DAVGSNIRIDSRGPEVMRI+PRLNE
Sbjct: 256 GNVIDICPVGALTSKPFAFKARNWELKNTETIDVTDAVGSNIRIDSRGPEVMRIVPRLNE 315

Query: 181 DINEEWISDKTRFCYDGLKRQRLNDPMIRGTDGRFKAVSWRDALAVVAEVIHQVKPEEIV 240
           DINEEWISDKTRFCYDGLKRQRLNDPMIRG DGRFK V+WR+AL++VAEV HQVKPEEIV
Sbjct: 316 DINEEWISDKTRFCYDGLKRQRLNDPMIRGPDGRFKPVNWREALSLVAEVAHQVKPEEIV 375

Query: 241 GVAGKLSDAESMMALKDFLNKMGSNNVWCEGNGPNPNADLRSGYIMNSSISGLEKADVFL 300
           G++GKLSDAESM+ LKDFLN++GSNNVW EG G N NAD RSGYIMN+SI+GLEKAD FL
Sbjct: 376 GISGKLSDAESMIVLKDFLNRLGSNNVWGEGIGVNTNADFRSGYIMNTSIAGLEKADAFL 435

Query: 301 LVGTQPRVEAAMVNARIRKTVRATNAKVGYIGPPSDFNYDCEHLGTGPQTLLEIAEGRHP 360
           LVGTQPRVEAAMVNARIRKTV A +AKVGYIGP +DFNYD EHLGTGPQTLLEIAEGRHP
Sbjct: 436 LVGTQPRVEAAMVNARIRKTVTANHAKVGYIGPATDFNYDNEHLGTGPQTLLEIAEGRHP 495

Query: 361 FYSKILNAKNPAIIVGAGIFERSDKDAIFSTVDAIAKKANVVRPDWNGFNVXXXXXXXXX 420
           F   I NAKNP IIVGAGIFER D+DAIF+ V+ IAK+ NVVR DWNG NV         
Sbjct: 496 FSKTISNAKNPVIIVGAGIFERKDQDAIFAAVETIAKQGNVVRSDWNGLNVLLLHAAQAA 555

Query: 421 XXXXXXVPESSQSIESAKFVYLMGADDVNLDKLPNDAFLVYQGHHGDRGVYRANVILPAA 480
                 VP+S +S+ESAKFVYLMGADD NLDK+P DAF+VYQGHHGD+ VYRANVILPAA
Sbjct: 556 ALDLGLVPQSEKSLESAKFVYLMGADDTNLDKIPKDAFVVYQGHHGDKSVYRANVILPAA 615

Query: 481 AFTEKEGTYANTEGCAQQTLPAVPTVGDARDDWKIIRALSEVAGARLPYDSIGAIRSRIR 540
           AF+EKEGTY NTEGC QQT PAVPTVGD+RDDWKIIRALSE+AG RLPYD+IG +R+R+R
Sbjct: 616 AFSEKEGTYENTEGCTQQTWPAVPTVGDSRDDWKIIRALSEIAGVRLPYDTIGGVRARLR 675

Query: 541 NVAPNLLSLDEREPATFWASLKPECTQKISSTPFNASVENFYMTDAITRASKIMAQCSAL 600
            VAPNL  +DEREPA   +SL+P  T+K+  TPF  +VENFYMTDAITRASKIMAQCSA 
Sbjct: 676 TVAPNLAQMDEREPAALPSSLRPTFTKKVDPTPFGIAVENFYMTDAITRASKIMAQCSAT 735

Query: 601 LLKK 604
           LLKK
Sbjct: 736 LLKK 739