Jatropha Genome Database

JcCA0307531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307531.10 + phase: 0 /partial
         (336 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g134310.1 hypothetical protein chr04_pseudomolecule_I...    68   6e-12
IMGA|Medtr6g015390.1 hypothetical protein chr06_pseudomolecule_I...    67   9e-12

>IMGA|Medtr4g134310.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 32378157-32375879 E
           EGN_Mt090430 20090702
          Length = 140

 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 8/87 (9%)

Query: 182 MPTTYKKDLETDRLKYRTEIYVENMLRLESGAIREFVGNRMIMAVVDMLVELDVAIGWDD 241
           MP  + ++ E         +YVENML LESG+I E VG  M+ A+VD L+ELDV IGWD 
Sbjct: 1   MPKRFAREPEIV-------MYVENMLMLESGSIGEIVGGTMLPAIVDKLIELDVEIGWDG 53

Query: 242 ILRDDSSKGIFAIELEEGDIGSDDEEN 268
            +++D +K IF +E EE     DD E 
Sbjct: 54  KIQED-AKSIFEMEFEENAEFEDDGEK 79


>IMGA|Medtr6g015390.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 3833285-3831735 E
           EGN_Mt090430 20090702
          Length = 115

 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 201 IYVENMLRLESGAIREFVGNRMIMAVVDMLVELDVAIGWDDILRDDSSKGIFAIELEEGD 260
           +YVENML LESG+I E VG  M+ A+VD L+ELDV IGWD  +++D +K IF +E EE  
Sbjct: 13  MYVENMLMLESGSIGEIVGGTMLPAIVDKLIELDVEIGWDGKIQED-AKSIFEMEFEENA 71

Query: 261 IGSDDEEN 268
              DD E 
Sbjct: 72  EFEDDGEK 79