Jatropha Genome Database
- JcCA0307051.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0307051.30 - phase: 0
(243 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr8g012680.1 Ribosomal protein S8E chr08_pseudomolecule_... 290 5e-79
IMGA|Medtr8g012690.1 Plant EC metallothionein-like protein, fami... 272 1e-73
IMGA|Medtr8g012680.2 Ribosomal protein S8E chr08_pseudomolecule_... 189 1e-48
IMGA|Medtr3g166470.1 Ribosomal protein S8E chr03_pseudomolecule_... 176 1e-44
IMGA|Medtr3g166450.1 Ribosomal protein S8E chr03_pseudomolecule_... 105 3e-23
IMGA|Medtr3g166400.1 Ribosomal protein S8E chr03_pseudomolecule_... 77 8e-15
>IMGA|Medtr8g012680.1 Ribosomal protein S8E
chr08_pseudomolecule_IMGAG_V3 2198871-2196264 F
EGN_Mt090430 20090702
Length = 215
Score = 290 bits (742), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 144/178 (80%), Positives = 150/178 (84%), Gaps = 6/178 (3%)
Query: 54 KPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL 113
+PANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTR+LDVVYNASNNEL
Sbjct: 32 QPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNEL 91
Query: 114 VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKK 173
VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR KK
Sbjct: 92 VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR------KKKNVSKKEEEAEAATEEVKK 145
Query: 174 SNHVQRKLEKRQKDRKLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYM 231
S HVQRKLE+RQK+R+LD HIEEQFG GRLLACISSRPGQCGRADGYILEGKELEFYM
Sbjct: 146 SAHVQRKLEQRQKERQLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYM 203
>IMGA|Medtr8g012690.1 Plant EC metallothionein-like protein, family
15; Ribosomal protein S8E chr08_pseudomolecule_IMGAG_V3
2208147-2202841 E EGN_Mt090430 20090702
Length = 318
Score = 272 bits (696), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/178 (76%), Positives = 145/178 (81%), Gaps = 4/178 (2%)
Query: 54 KPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL 113
+PANTKLSSNKTVR IRVRGGN+K RALRLDTGN SWGSEAVTRK+R+L+VVYNASNNEL
Sbjct: 133 QPANTKLSSNKTVRSIRVRGGNLKCRALRLDTGNISWGSEAVTRKSRLLNVVYNASNNEL 192
Query: 114 VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKK 173
VRTQTLVKSAIVQVDAAPFKQWYLQHYGV+IG KK
Sbjct: 193 VRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGN----KKKTAAKQDSAKEAEAATEETKK 248
Query: 174 SNHVQRKLEKRQKDRKLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYM 231
SNHV RKLE R+KDR+LD HIEEQFG GRLLACISSRPGQCGRADGYILEGKELEFYM
Sbjct: 249 SNHVLRKLENREKDRQLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYM 306
>IMGA|Medtr8g012680.2 Ribosomal protein S8E
chr08_pseudomolecule_IMGAG_V3 2198871-2197322 F
EGN_Mt090430 20090702
Length = 138
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 90/93 (96%), Positives = 93/93 (100%)
Query: 54 KPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL 113
+PANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTR+LDVVYNASNNEL
Sbjct: 32 QPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNEL 91
Query: 114 VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 146
VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR
Sbjct: 92 VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 124
>IMGA|Medtr3g166470.1 Ribosomal protein S8E
chr03_pseudomolecule_IMGAG_V3 43576649-43574789 E
EGN_Mt090430 20090702
Length = 258
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/92 (91%), Positives = 89/92 (96%)
Query: 54 KPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL 113
+PANTKLSSNKT+R IRVRGGNVK RALRLDTGN SWGSEAVTRKTR+L+VVYNASNNEL
Sbjct: 11 QPANTKLSSNKTLRTIRVRGGNVKCRALRLDTGNCSWGSEAVTRKTRLLNVVYNASNNEL 70
Query: 114 VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIG 145
VRTQTLVKSAIVQVDAAPFKQWYLQHYGV+IG
Sbjct: 71 VRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIG 102
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/60 (90%), Positives = 57/60 (95%)
Query: 172 KKSNHVQRKLEKRQKDRKLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYM 231
KKSN+VQRKLE+RQKDR+LDP IE QFG GRLLACISSRPGQCGRADGYILEGKELEFYM
Sbjct: 186 KKSNNVQRKLEQRQKDRRLDPLIEVQFGGGRLLACISSRPGQCGRADGYILEGKELEFYM 245
>IMGA|Medtr3g166450.1 Ribosomal protein S8E
chr03_pseudomolecule_IMGAG_V3 43571613-43571242 E
EGN_Mt090430 20090702
Length = 87
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 172 KKSNHVQRKLEKRQKDRKLD-PHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFY 230
K SN+VQRKLE+RQKD +LD P IEEQ G GRLLACISSRPGQCG ADGYIL+GKELEFY
Sbjct: 15 KNSNNVQRKLEQRQKDNRLDIPVIEEQLGGGRLLACISSRPGQCGTADGYILKGKELEFY 74
Query: 231 MXXXXXXXXXXAA 243
M AA
Sbjct: 75 MKKLQKKMSNDAA 87
>IMGA|Medtr3g166400.1 Ribosomal protein S8E
chr03_pseudomolecule_IMGAG_V3 43562710-43561531 E
EGN_Mt090430 20090702
Length = 82
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 40/48 (83%)
Query: 172 KKSNHVQRKLEKRQKDRKLDPHIEEQFGAGRLLACISSRPGQCGRADG 219
KKSN VQRKLE+RQKDR+LD IE QF GRLLACISS+PG CGRA G
Sbjct: 14 KKSNKVQRKLEQRQKDRRLDTLIEAQFAGGRLLACISSQPGLCGRAMG 61