Jatropha Genome Database

JcCA0306971.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306971.20 + phase: 0 /partial
         (217 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g104170.1 Porphobilinogen deaminase chr04_pseudomolec...   279   9e-76
IMGA|Medtr4g104180.1 Porphobilinogen deaminase chr04_pseudomolec...    96   1e-20

>IMGA|Medtr4g104170.1 Porphobilinogen deaminase
           chr04_pseudomolecule_IMGAG_V3 22656866-22659888 F
           EGN_Mt090430 20090702
          Length = 369

 Score =  279 bits (713), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 145/201 (72%), Positives = 158/201 (78%), Gaps = 14/201 (6%)

Query: 18  PSSPVIFRASGSVSVIGFSLPCF-QTRVFPNCIKKRSFSVPRASVAVEQQTQESKLALIR 76
           PS+P +F  S S     F +P F + R+             RASVAVEQQTQ++K A+IR
Sbjct: 17  PSNPSLFLLSSSCPFASFKIPPFSKCRI-------------RASVAVEQQTQQTKTAIIR 63

Query: 77  IGTRGSPLALAQAYETRDKLMATHSELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFT 136
           IGTRGSPLALAQA+ETRDKL+A+H+ELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFT
Sbjct: 64  IGTRGSPLALAQAHETRDKLIASHTELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFT 123

Query: 137 KEIDEALINGEIDIAVHSMKDVPTYLPEKTILPCNLEREDVRDAFIXXXXXXXXXXXXXX 196
           KEIDEALING+IDIAVHSMKDVPTYLPEKTILPCNL REDVRDAFI              
Sbjct: 124 KEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLSAASLADLPAGS 183

Query: 197 VIGTASLRRKSQILHRYASLS 217
           VIGTASLRRKSQILHRY SLS
Sbjct: 184 VIGTASLRRKSQILHRYPSLS 204


>IMGA|Medtr4g104180.1 Porphobilinogen deaminase
           chr04_pseudomolecule_IMGAG_V3 22656866-22660007 E
           EGN_Mt090430 20090702
          Length = 228

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 47/63 (74%)

Query: 155 MKDVPTYLPEKTILPCNLEREDVRDAFIXXXXXXXXXXXXXXVIGTASLRRKSQILHRYA 214
           MKDVPTYLPEKTILPCNL REDVRDAFI              VIGTASLRRKSQILHRY 
Sbjct: 1   MKDVPTYLPEKTILPCNLPREDVRDAFISLSAASLADLPAGSVIGTASLRRKSQILHRYP 60

Query: 215 SLS 217
           SLS
Sbjct: 61  SLS 63