Jatropha Genome Database

JcCA0306971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306971.10 - phase: 0 
         (102 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC225519_6.1 Ubiquitin; Inorganic pyrophosphatase AC225519....   104   1e-23
IMGA|AC202568_2.1 Ubiquitin AC202568.9 11975-9777 H EGN_Mt090430...    94   2e-20
IMGA|AC225519_3.1 Ubiquitin AC225519.5 22261-24507 H EGN_Mt09043...    93   3e-20
IMGA|Medtr4g133620.1 Ubiquitin chr04_pseudomolecule_IMGAG_V3 320...    79   6e-16
IMGA|Medtr4g133640.1 Ubiquitin-like protein SMT3, related chr04_...    74   1e-14
IMGA|AC225519_5.1 Ubiquitin-like protein SMT3, putative AC225519...    67   2e-12

>IMGA|AC225519_6.1 Ubiquitin; Inorganic pyrophosphatase AC225519.5
           35386-39197 H EGN_Mt090430 20090702
          Length = 319

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 67/96 (69%), Gaps = 9/96 (9%)

Query: 8   QTPEE---------DKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV 58
           QTP+E         D    DQ A + LKVK QDGNE+FF I +ST LKKLMNAYC+  SV
Sbjct: 143 QTPDELQMMDGDEIDVVFFDQIARMKLKVKCQDGNEIFFSINKSTHLKKLMNAYCNHHSV 202

Query: 59  EFNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLH 94
           +FNSI F+F+   ++ EQ+P+E++M DGDEIDA+ +
Sbjct: 203 DFNSIGFMFNEHHVQAEQSPNEMQMVDGDEIDAIFY 238



 Score = 93.2 bits (230), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 58/83 (69%)

Query: 11  EEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGR 70
           E D    DQS  INLKVKGQ G E  F I RST+LKKLM+ YC R   +F+ +AFLF+G 
Sbjct: 232 EIDAIFYDQSRRINLKVKGQVGFEASFGINRSTRLKKLMDVYCCRYCFDFDGVAFLFNGC 291

Query: 71  RLRGEQTPDELEMEDGDEIDAML 93
            +  EQTPDEL ME+GDE+ AML
Sbjct: 292 LVESEQTPDELGMENGDEMLAML 314



 Score = 91.7 bits (226), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 59/87 (67%), Gaps = 4/87 (4%)

Query: 11  EEDKKPNDQSAHI----NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFL 66
           E D    DQSAHI    +L +K +DG EV+F I RST LKKLM+ Y  R  ++ N +AFL
Sbjct: 74  EMDTISYDQSAHIKLNLDLNIKDKDGIEVYFNISRSTPLKKLMDFYGYRHCLDINGVAFL 133

Query: 67  FDGRRLRGEQTPDELEMEDGDEIDAML 93
           F+GR +  EQTPDEL+M DGDEID + 
Sbjct: 134 FNGRLVTAEQTPDELQMMDGDEIDVVF 160



 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 15 KPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE-FNSIAFLFDGRRLR 73
          KP  +   I LK+ GQDGN     I RSTQLKKL+  YCD+ SVE   SI F FDG  L+
Sbjct: 2  KPIKEGTCIRLKLNGQDGNVTLVCIDRSTQLKKLVKDYCDQHSVEDPTSITFWFDGNGLQ 61

Query: 74 GEQTPDELEMED 85
          G+  PDE+ M+D
Sbjct: 62 GDHCPDEMHMDD 73


>IMGA|AC202568_2.1 Ubiquitin AC202568.9 11975-9777 H EGN_Mt090430
           20090702
          Length = 169

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 60/76 (78%)

Query: 20  SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGRRLRGEQTPD 79
           + +INL VK  D  +++FR+K++TQ++KLM++YCDR +++F  + FLF+GRR+   QTP 
Sbjct: 26  TNYINLHVKDTDDIKLYFRLKKTTQMRKLMDSYCDRNALDFYLMVFLFNGRRIYPHQTPY 85

Query: 80  ELEMEDGDEIDAMLHQ 95
           EL++ED D IDA+LHQ
Sbjct: 86  ELDLEDDDAIDAVLHQ 101



 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 23  INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGRRLRGEQTPDEL 81
           IN+KVKGQDG +  FRI++S  LKKLM+ YC +  ++ N +  LF+G  ++ EQTP E+
Sbjct: 108 INIKVKGQDGFQASFRIRKSAALKKLMDQYCYQYCLDVNGVGLLFNGYLVQPEQTPFEV 166


>IMGA|AC225519_3.1 Ubiquitin AC225519.5 22261-24507 H EGN_Mt090430
           20090702
          Length = 188

 Score = 92.8 bits (229), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 60/76 (78%)

Query: 20  SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGRRLRGEQTPD 79
           + +INL VK  D  +++FR+K++TQ++KLM++YCDR +++F  + FLF+GRR+   QTP 
Sbjct: 26  TNYINLHVKDTDDIKLYFRLKKTTQMRKLMDSYCDRNALDFYLMVFLFNGRRIYPHQTPY 85

Query: 80  ELEMEDGDEIDAMLHQ 95
           EL++ED D IDA+LHQ
Sbjct: 86  ELDLEDDDAIDAVLHQ 101



 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 54/76 (71%)

Query: 23  INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGRRLRGEQTPDELE 82
           IN+KVKGQDG +  FRI++S  LKKLM+ YC +  ++ N +  LF+G  ++ EQTP EL 
Sbjct: 108 INIKVKGQDGFQASFRIRKSAALKKLMDQYCYQYCLDVNGVGLLFNGYLVQPEQTPFELG 167

Query: 83  MEDGDEIDAMLHQTGG 98
           +EDGDE+ AMLH   G
Sbjct: 168 IEDGDEMLAMLHLRTG 183


>IMGA|Medtr4g133620.1 Ubiquitin chr04_pseudomolecule_IMGAG_V3
          32073591-32069874 H EGN_Mt090430 20090702
          Length = 104

 Score = 78.6 bits (192), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 1/99 (1%)

Query: 1  MSSGVIGQTPEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEF 60
          M+S    +  E D+  +D S  IN  ++ QDG+ VFF++     LK     YC + ++E+
Sbjct: 1  MASNGKRKASERDEISSDDSVRINFSIRAQDGSRVFFKVNPDRYLKIPFKKYCQKSNLEY 60

Query: 61 NSIAFLFDGRRLRG-EQTPDELEMEDGDEIDAMLHQTGG 98
           ++ FL +G+R+ G  QTP  L++++G EID M  QTGG
Sbjct: 61 ETVTFLLEGKRINGNRQTPRTLKLKNGAEIDVMKQQTGG 99


>IMGA|Medtr4g133640.1 Ubiquitin-like protein SMT3, related
           chr04_pseudomolecule_IMGAG_V3 32083502-32082168 H
           EGN_Mt090430 20090702
          Length = 131

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 4/101 (3%)

Query: 2   SSGVIG---QTPEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV 58
           S+G++G   +  E D+   D   HI   ++GQDGNE  F++ +   L      YC +  +
Sbjct: 3   SNGILGNKRKASERDEVTEDGIVHIEFGIRGQDGNEQHFKVNQDKFLITAFQQYCKKMKL 62

Query: 59  EFNSIAFLFDGRRLRG-EQTPDELEMEDGDEIDAMLHQTGG 98
           ++ +I FL D + ++G  QTP  L +++GD IDAM HQ+GG
Sbjct: 63  QYATINFLLDEKSIQGNRQTPKMLNLKNGDTIDAMKHQSGG 103


>IMGA|AC225519_5.1 Ubiquitin-like protein SMT3, putative
          AC225519.5 30299-32216 E EGN_Mt090430 20090702
          Length = 136

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 56/69 (81%)

Query: 27 VKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGRRLRGEQTPDELEMEDG 86
          +K  DG +V+  I+R+++++KLMNAYC + S++FNS+AFL +G R+   QTP+EL++ED 
Sbjct: 7  IKLIDGIKVYVNIRRNSRMQKLMNAYCGQNSLDFNSMAFLSNGHRILPHQTPEELDLEDE 66

Query: 87 DEIDAMLHQ 95
          DEIDA+L+Q
Sbjct: 67 DEIDAVLYQ 75