Jatropha Genome Database
- JcCA0306761.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0306761.10 - phase: 2 /TE/partial
(374 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr7g140440.1 Zinc finger, CCHC-type; Putative 5-3 exonuc... 472 e-133
IMGA|Medtr7g140440.3 Zinc finger, CCHC-type; Putative 5-3 exonuc... 471 e-133
IMGA|Medtr7g140440.2 Zinc finger, CCHC-type; Putative 5-3 exonuc... 471 e-133
IMGA|Medtr4g079110.1 Zinc finger, CCHC-type; Putative 5-3 exonuc... 452 e-127
IMGA|Medtr1g096550.1 Zinc finger, CCHC-type; Putative 5-3 exonuc... 420 e-118
IMGA|AC146557_9.1 Putative 5-3 exonuclease AC146557.33 43451-495... 325 2e-89
IMGA|AC229727_8.1 Putative 5-3 exonuclease AC229727.6 32377-3297... 97 2e-20
IMGA|Medtr6g096320.1 Putative 5-3 exonuclease chr06_pseudomolecu... 97 2e-20
IMGA|Medtr1g096560.1 Putative 5-3 exonuclease chr01_pseudomolecu... 59 5e-09
>IMGA|Medtr7g140440.1 Zinc finger, CCHC-type; Putative 5-3
exonuclease chr07_pseudomolecule_IMGAG_V3
33823109-33833019 E EGN_Mt090430 20090702
Length = 956
Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/368 (62%), Positives = 279/368 (75%), Gaps = 3/368 (0%)
Query: 5 QPSPTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXXXXXXXXX 64
+P+P ++D+VF+ MFDYID LF +VRPRKLLY+AIDGVAPRAKMNQQ
Sbjct: 70 KPAPATYDDVFKSMFDYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAKDAAE 129
Query: 65 XXXXXXXXXXXXXXXGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNYDPG 124
L KE+++T DSNVITPGT FMAVLS+ALQYYI RLNY+PG
Sbjct: 130 AEAEEERLRNEFADQIELLTSKEKTETHDSNVITPGTPFMAVLSVALQYYIQTRLNYNPG 189
Query: 125 WKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTRHCLYGLDADLIMLALATHEVH 184
W+ KV+LSD+NVPGEGEHKIM YIRLQRNLPG++PNTRHCLYGLDADLIML+LATHE+H
Sbjct: 190 WRNTKVMLSDSNVPGEGEHKIMDYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIH 249
Query: 185 FSILREVVFTPGQQDKCFLCGQMGHLAAGCEGKAKRKAGEFDEKGGEAVAVKKPYQFLNI 244
FSILREV+ PGQQ+KC++CGQ+GHLAA C GK A D + KK YQFL+I
Sbjct: 250 FSILREVITFPGQQEKCYMCGQVGHLAAECRGKPGDNA--LDWPVDDTPIHKKKYQFLHI 307
Query: 245 WTLREYLEFEMRIPNPPFDIDFERVVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAV 304
W LREYL++E+ IP+PPF+IDFER+VDDF+F+CFFVGNDFLPHMPTLEIREGA+NLL+ +
Sbjct: 308 WVLREYLQYELLIPDPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAVNLLMHI 367
Query: 305 YKKEFSTMGGYLTDASKPNLSNVEHFIQAVGSYEDKIFQKRARLHQRQSERIKREKAQAR 364
Y+KEF+ MGGYLTDA + L VE+FIQ V +E++IFQKR R+ Q Q E + +A+AR
Sbjct: 368 YRKEFTAMGGYLTDAGEVFLERVENFIQCVAVHEEQIFQKRVRIQQSQ-EFNEGMRARAR 426
Query: 365 RGDDAEPQ 372
EP+
Sbjct: 427 GEMPEEPR 434
>IMGA|Medtr7g140440.3 Zinc finger, CCHC-type; Putative 5-3
exonuclease chr07_pseudomolecule_IMGAG_V3
33823109-33828323 E EGN_Mt090430 20090702
Length = 442
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/368 (62%), Positives = 279/368 (75%), Gaps = 3/368 (0%)
Query: 5 QPSPTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXXXXXXXXX 64
+P+P ++D+VF+ MFDYID LF +VRPRKLLY+AIDGVAPRAKMNQQ
Sbjct: 70 KPAPATYDDVFKSMFDYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAKDAAE 129
Query: 65 XXXXXXXXXXXXXXXGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNYDPG 124
L KE+++T DSNVITPGT FMAVLS+ALQYYI RLNY+PG
Sbjct: 130 AEAEEERLRNEFADQIELLTSKEKTETHDSNVITPGTPFMAVLSVALQYYIQTRLNYNPG 189
Query: 125 WKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTRHCLYGLDADLIMLALATHEVH 184
W+ KV+LSD+NVPGEGEHKIM YIRLQRNLPG++PNTRHCLYGLDADLIML+LATHE+H
Sbjct: 190 WRNTKVMLSDSNVPGEGEHKIMDYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIH 249
Query: 185 FSILREVVFTPGQQDKCFLCGQMGHLAAGCEGKAKRKAGEFDEKGGEAVAVKKPYQFLNI 244
FSILREV+ PGQQ+KC++CGQ+GHLAA C GK A D + KK YQFL+I
Sbjct: 250 FSILREVITFPGQQEKCYMCGQVGHLAAECRGKPGDNA--LDWPVDDTPIHKKKYQFLHI 307
Query: 245 WTLREYLEFEMRIPNPPFDIDFERVVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAV 304
W LREYL++E+ IP+PPF+IDFER+VDDF+F+CFFVGNDFLPHMPTLEIREGA+NLL+ +
Sbjct: 308 WVLREYLQYELLIPDPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAVNLLMHI 367
Query: 305 YKKEFSTMGGYLTDASKPNLSNVEHFIQAVGSYEDKIFQKRARLHQRQSERIKREKAQAR 364
Y+KEF+ MGGYLTDA + L VE+FIQ V +E++IFQKR R+ Q Q E + +A+AR
Sbjct: 368 YRKEFTAMGGYLTDAGEVFLERVENFIQCVAVHEEQIFQKRVRIQQSQ-EFNEGMRARAR 426
Query: 365 RGDDAEPQ 372
EP+
Sbjct: 427 GEMPEEPR 434
>IMGA|Medtr7g140440.2 Zinc finger, CCHC-type; Putative 5-3
exonuclease chr07_pseudomolecule_IMGAG_V3
33823109-33830234 E EGN_Mt090430 20090702
Length = 629
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/368 (62%), Positives = 279/368 (75%), Gaps = 3/368 (0%)
Query: 5 QPSPTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXXXXXXXXX 64
+P+P ++D+VF+ MFDYID LF +VRPRKLLY+AIDGVAPRAKMNQQ
Sbjct: 70 KPAPATYDDVFKSMFDYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAKDAAE 129
Query: 65 XXXXXXXXXXXXXXXGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNYDPG 124
L KE+++T DSNVITPGT FMAVLS+ALQYYI RLNY+PG
Sbjct: 130 AEAEEERLRNEFADQIELLTSKEKTETHDSNVITPGTPFMAVLSVALQYYIQTRLNYNPG 189
Query: 125 WKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTRHCLYGLDADLIMLALATHEVH 184
W+ KV+LSD+NVPGEGEHKIM YIRLQRNLPG++PNTRHCLYGLDADLIML+LATHE+H
Sbjct: 190 WRNTKVMLSDSNVPGEGEHKIMDYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIH 249
Query: 185 FSILREVVFTPGQQDKCFLCGQMGHLAAGCEGKAKRKAGEFDEKGGEAVAVKKPYQFLNI 244
FSILREV+ PGQQ+KC++CGQ+GHLAA C GK A D + KK YQFL+I
Sbjct: 250 FSILREVITFPGQQEKCYMCGQVGHLAAECRGKPGDNA--LDWPVDDTPIHKKKYQFLHI 307
Query: 245 WTLREYLEFEMRIPNPPFDIDFERVVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAV 304
W LREYL++E+ IP+PPF+IDFER+VDDF+F+CFFVGNDFLPHMPTLEIREGA+NLL+ +
Sbjct: 308 WVLREYLQYELLIPDPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAVNLLMHI 367
Query: 305 YKKEFSTMGGYLTDASKPNLSNVEHFIQAVGSYEDKIFQKRARLHQRQSERIKREKAQAR 364
Y+KEF+ MGGYLTDA + L VE+FIQ V +E++IFQKR R+ Q Q E + +A+AR
Sbjct: 368 YRKEFTAMGGYLTDAGEVFLERVENFIQCVAVHEEQIFQKRVRIQQSQ-EFNEGMRARAR 426
Query: 365 RGDDAEPQ 372
EP+
Sbjct: 427 GEMPEEPR 434
>IMGA|Medtr4g079110.1 Zinc finger, CCHC-type; Putative 5-3
exonuclease chr04_pseudomolecule_IMGAG_V3
15747564-15753520 E EGN_Mt090430 20090702
Length = 809
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/271 (79%), Positives = 240/271 (88%), Gaps = 5/271 (1%)
Query: 104 MAVLSIALQYYIHLRLNYDPGWKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTR 163
MAVLS+ALQYYIHLRLN DPGWK IKVILSDANVPGEGEHKI SYIRLQRNL GY+PNT+
Sbjct: 1 MAVLSVALQYYIHLRLNNDPGWKNIKVILSDANVPGEGEHKITSYIRLQRNLKGYDPNTQ 60
Query: 164 HCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAAGCEGKAKRKAG 223
HCLYGLDADLIML LATHE+HFSILREVVFTPGQ DKCFLCGQMGH+AA CEGKAKRK
Sbjct: 61 HCLYGLDADLIMLGLATHEIHFSILREVVFTPGQ-DKCFLCGQMGHMAAECEGKAKRKT- 118
Query: 224 EFDEKGGEAVAVKKPYQFLNIWTLREYLEFEMRIPNPPFDIDFERVVDDFIFMCFFVGND 283
D++ G+A+ K P+QFLNIWTLREYLE+EMRIPN PF+IDFE ++DDFIF+CFFVGND
Sbjct: 119 --DDEKGDAIVAKLPFQFLNIWTLREYLEYEMRIPNSPFEIDFECILDDFIFICFFVGND 176
Query: 284 FLPHMPTLEIREGAINLLIAVYKKEFSTMGGYLTDASKPNLSNVEHFIQAVGSYEDKIFQ 343
FLPHMPTL+IREGAI+ L+ VYK EF+ +GGYLT+ SKPNLS VEHFIQAVGS+ED+IFQ
Sbjct: 177 FLPHMPTLDIREGAIDSLMTVYKNEFTKLGGYLTNGSKPNLSRVEHFIQAVGSHEDEIFQ 236
Query: 344 KRARLHQRQSERIKREKAQARRGDDAEPQFK 374
KRARLHQRQ E IKR K QA RGDD PQ +
Sbjct: 237 KRARLHQRQVETIKRRKRQA-RGDDVGPQVQ 266
>IMGA|Medtr1g096550.1 Zinc finger, CCHC-type; Putative 5-3
exonuclease chr01_pseudomolecule_IMGAG_V3
19776783-19768494 E EGN_Mt090430 20090702
Length = 883
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/311 (65%), Positives = 236/311 (75%), Gaps = 2/311 (0%)
Query: 40 DGVAPRAKMNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRKLPPKEESQTFDSNVITP 99
DGVAPRAKMNQQ G L K++ +T DSNVITP
Sbjct: 25 DGVAPRAKMNQQRSRRFRAAKDAAEAEAEEERLRKEFVEEGALLSSKDKPETSDSNVITP 84
Query: 100 GTEFMAVLSIALQYYIHLRLNYDPGWKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYN 159
GT+FMA LS+ALQYY+ RLN++P WK IKVILSD+NVPGEGEHKIM YIRLQRN+PG+N
Sbjct: 85 GTKFMASLSVALQYYVQTRLNHNPAWKNIKVILSDSNVPGEGEHKIMEYIRLQRNIPGFN 144
Query: 160 PNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAAGCEGKAK 219
PNTRHCLYGLDADLIML+LATHEVHFSILREV+ PG QDKCF+CGQ GH AA C GK +
Sbjct: 145 PNTRHCLYGLDADLIMLSLATHEVHFSILREVITLPG-QDKCFVCGQAGHFAADCHGKPE 203
Query: 220 RKAGEFDEKGGEAVAVKKPYQFLNIWTLREYLEFEMRIPNPPFDIDFERVVDDFIFMCFF 279
KA E E KK YQFLNIW LREYL++E+ IPNPPF+IDFERVVDDF+F+CFF
Sbjct: 204 TKA-EDGNPADEIPIHKKKYQFLNIWVLREYLQYELEIPNPPFEIDFERVVDDFVFLCFF 262
Query: 280 VGNDFLPHMPTLEIREGAINLLIAVYKKEFSTMGGYLTDASKPNLSNVEHFIQAVGSYED 339
VGNDFLPHMPTLEIREGAINLL+ +Y+KEF+ MGGYLT A + L VE+FIQ+V +ED
Sbjct: 263 VGNDFLPHMPTLEIREGAINLLMHIYRKEFTAMGGYLTYAGEVFLDRVEYFIQSVAVHED 322
Query: 340 KIFQKRARLHQ 350
+IFQKR R+ Q
Sbjct: 323 QIFQKRVRVQQ 333
>IMGA|AC146557_9.1 Putative 5-3 exonuclease AC146557.33 43451-49538
H EGN_Mt090430 20090702
Length = 863
Score = 325 bits (834), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 180/368 (48%), Positives = 226/368 (61%), Gaps = 42/368 (11%)
Query: 8 PTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXXXXXXXXXXXX 67
PT+F EVF MF+YIDRL + +PRKLLYMAIDGVAPRAKMNQQ
Sbjct: 60 PTTFVEVFANMFEYIDRLVTIAKPRKLLYMAIDGVAPRAKMNQQRTRRFRNVKDDEMREV 119
Query: 68 XXXXXXXXXXXXGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNYDPGWKK 127
G+++ PK+E + DSN+ITPGT+FM +S AL+ YI +++ DP WK
Sbjct: 120 EEERLRKEFEMEGKQVLPKQECEVSDSNIITPGTDFMHQISNALKSYISSKISSDPLWKG 179
Query: 128 IKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTRHCLYGLDADLIMLALATHEVHFSI 187
I VILSDANVPGEGEHK+MS+IR QR LP Y+PNT HCLYG DADLIML L+ HE HFSI
Sbjct: 180 IMVILSDANVPGEGEHKVMSFIRKQRGLPDYDPNTVHCLYGSDADLIMLGLSCHEPHFSI 239
Query: 188 LREVVFTPGQQDKCFLCGQMGHLAAGCEGKAKRKAGEFDEKGGEAVAVKKPYQFLNIWTL 247
LRE P + +K M ++ L+IW L
Sbjct: 240 LRED--PPDRYEKLPPNAPMR------------------------------FKLLHIWLL 267
Query: 248 REYLEFEMRIPNPP--FDIDFERVVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAVY 305
REYLE EM+I +PP F D ER+VDDFIF+CFF GNDFLPH+P+L I E AI+LL+ VY
Sbjct: 268 REYLEIEMKIEDPPKNFVFDLERIVDDFIFICFFSGNDFLPHLPSLYIHEDAIDLLMTVY 327
Query: 306 KKEFSTMGGYLTDASK--------PNLSNVEHFIQAVGSYEDKIFQKRARLHQRQSERIK 357
KKEFS +GGYL D +K LS VE F+ VG+YE+KIF KR + ++ R+
Sbjct: 328 KKEFSKIGGYLVDINKIGEKHGAYVKLSRVEKFVLMVGTYEEKIFSKRTAIRDKKLRRLI 387
Query: 358 REKAQARR 365
+ +++
Sbjct: 388 SDNENSKQ 395
>IMGA|AC229727_8.1 Putative 5-3 exonuclease AC229727.6 32377-32971 H
EGN_Mt090430 20090702
Length = 178
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 84/154 (54%), Gaps = 34/154 (22%)
Query: 175 MLALATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAAGCEGKAKRKAGEFDEKGGEAVA 234
ML L+ HE HFSILRE V P K L MG
Sbjct: 1 MLGLSCHEPHFSILREDV--PNYYGKLQLNAPMG-------------------------- 32
Query: 235 VKKPYQFLNIWTLREYLEFEMRIPN--PPFDIDFERVVDDFIFMCFFVGNDFLPHMPTLE 292
++ L+IW L+EYLE EM+I + F D ER+VDDFIF+ FF GNDFLPH+PT
Sbjct: 33 ----FKILHIWLLKEYLEIEMKIEDLLKNFIFDLERIVDDFIFIFFFAGNDFLPHLPTFH 88
Query: 293 IREGAINLLIAVYKKEFSTMGGYLTDASKPNLSN 326
I +GAI+LL+ +YKKE S +GGYL D + + N
Sbjct: 89 IHDGAIDLLMTIYKKELSRLGGYLVDMVQMLVMN 122
>IMGA|Medtr6g096320.1 Putative 5-3 exonuclease
chr06_pseudomolecule_IMGAG_V3 20994402-20994996 H
EGN_Mt090430 20090702
Length = 178
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 84/154 (54%), Gaps = 34/154 (22%)
Query: 175 MLALATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAAGCEGKAKRKAGEFDEKGGEAVA 234
ML L+ HE HFSILRE V P K L MG
Sbjct: 1 MLGLSCHEPHFSILREDV--PNYYGKLQLNAPMG-------------------------- 32
Query: 235 VKKPYQFLNIWTLREYLEFEMRIPN--PPFDIDFERVVDDFIFMCFFVGNDFLPHMPTLE 292
++ L+IW L+EYLE EM+I + F D ER+VDDFIF+ FF GNDFLPH+PT
Sbjct: 33 ----FKILHIWLLKEYLEIEMKIEDLLKNFIFDLERIVDDFIFIFFFAGNDFLPHLPTFH 88
Query: 293 IREGAINLLIAVYKKEFSTMGGYLTDASKPNLSN 326
I +GAI+LL+ +YKKE S +GGYL D + + N
Sbjct: 89 IHDGAIDLLMTIYKKELSRLGGYLVDMVQMLVMN 122
>IMGA|Medtr1g096560.1 Putative 5-3 exonuclease
chr01_pseudomolecule_IMGAG_V3 19777863-19777303 H
EGN_Mt090430 20090702
Length = 107
Score = 58.5 bits (140), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 5 QPSPTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAID 40
+PSP ++DEVF+ +FDY+D LF +VRPRKLLY+A D
Sbjct: 63 KPSPATYDEVFKLVFDYVDHLFSLVRPRKLLYLATD 98