Jatropha Genome Database

JcCA0306361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306361.10 - phase: 0 
         (131 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g024720.1 hypothetical protein chr02_pseudomolecule_I...    62   6e-11

>IMGA|Medtr2g024720.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 6354635-6354186 H
           EGN_Mt090430 20090702
          Length = 149

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 46  YQVFYIKNAQP-FFLDDNEGLIXXXXXXXXXXXXXXXXXQIKN--------FKTRAFSVM 96
           +QVFY+KNA P  FL   E +                    K+          +R FSVM
Sbjct: 57  HQVFYLKNADPPMFLSIQERIKKRKMNRNKNKNMMKQKKHRKHKKKIVKNMVNSRPFSVM 116

Query: 97  LPKGFVPPSGSSPCHNEKPTSRLTFHCDLSS 127
           LPKGFVPPSGSSPCHN++P S ++FHC L+S
Sbjct: 117 LPKGFVPPSGSSPCHNDQPNS-VSFHCYLTS 146