Jatropha Genome Database
- JcCA0305801.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0305801.10 + phase: 0 /TE/pseudo/partial
(284 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 114 5e-26
IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse transc... 112 2e-25
IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse transc... 85 4e-17
IMGA|AC135504_4.1 gag-pol polyprotein, related AC135504.61 17375... 73 2e-13
IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse transc... 67 1e-11
IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse transc... 66 2e-11
IMGA|Medtr3g059210.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 62 2e-10
IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcrip... 59 3e-09
IMGA|Medtr6g077290.1 Ribonuclease H, putative chr06_pseudomolecu... 52 2e-07
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc... 51 6e-07
IMGA|Medtr6g077300.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V... 48 6e-06
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 71/106 (66%)
Query: 36 LVTKFETFYY*VMLFGLKNVGATDQRMDTTLFYEMIHKEIEVYIDDMIIMIKTLEEHPTT 95
+T + TF Y VM FGL N GAT QR TTLF++MIHKE+EVY+DDMI+ E+H
Sbjct: 214 FITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEY 273
Query: 96 LEWFIGRVIKYKLLLNRKKCAFGVTSSKVLAFIVGPKGIEIDPPKI 141
L R+ KYKL LN KC FGV S K+L FIV KGIE+DP K+
Sbjct: 274 LTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKV 319
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 89/154 (57%), Gaps = 10/154 (6%)
Query: 138 PPKIGNPLILYLTV*DAEISPMLAQVDE-ARV*KAIYYFNKKLLPNEQKYNLIERTCLAM 196
PP G PLI+YL V D + +L Q DE + AIYY +KK E +Y ++E+TC A+
Sbjct: 393 PPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCAL 452
Query: 197 VLATRKLRHYFQSYKVIAVSRMNPMKYLYGTPALVGKLVRWLILSSE----FDIEYAI-- 250
A ++LRHY ++ +SRM+P+KY++ A+ GK+ RW +L SE F + AI
Sbjct: 453 AWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYYIVFKTQKAIKG 512
Query: 251 ---TDFLATHPIKDNEQWKIDFPNEHLNLIEKKE 281
D LA P+ D + + DFP+E + ++ K+
Sbjct: 513 SILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKD 546
>IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
5672480-5674573 E EGN_Mt090430 20090702
Length = 253
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 71/106 (66%)
Query: 36 LVTKFETFYY*VMLFGLKNVGATDQRMDTTLFYEMIHKEIEVYIDDMIIMIKTLEEHPTT 95
+T + TF Y VM FGL N GAT QR TTLF++MIHKE+EVY+DDMI+ E+H
Sbjct: 82 FITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEY 141
Query: 96 LEWFIGRVIKYKLLLNRKKCAFGVTSSKVLAFIVGPKGIEIDPPKI 141
L R+ KYKL LN KC FGV S K+L F+V KGIE+DP K+
Sbjct: 142 LTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFVVSQKGIEVDPDKV 187
>IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr03_pseudomolecule_IMGAG_V3 14037305-14035821 H
EGN_Mt090430 20090702
Length = 479
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 61/106 (57%)
Query: 35 VLVTKFETFYY*VMLFGLKNVGATDQRMDTTLFYEMIHKEIEVYIDDMIIMIKTLEEHPT 94
+T + ++Y VM FGLKN GAT QR T F + I + EVYIDD++ K H
Sbjct: 103 AFMTNTKNYHYEVMYFGLKNAGATFQRSMDTAFSQQIGRNREVYIDDLVAKTKEGLSHTD 162
Query: 95 TLEWFIGRVIKYKLLLNRKKCAFGVTSSKVLAFIVGPKGIEIDPPK 140
LE +G+V KY++ LN KC+FGV K L F++ GIE + K
Sbjct: 163 DLEEILGQVRKYRIRLNPTKCSFGVQVGKFLGFLLTRWGIEANTDK 208
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 145 LILYLTV*DAEISPMLAQVDEARV*KAIYYFNKKLLPNEQKYNLIERTCLAMVLATRKLR 204
+ LYL + + +S +L + E K IYY ++ + Y IE LA+V RKLR
Sbjct: 290 IFLYLVISENAMSTVLVEESEVGE-KPIYYVSRVFKGAKLPYQKIECLALAVVTTARKLR 348
Query: 205 HYFQSYKVIAVSRMNPMKYLYGTPALVGKLVRWLILSSEFDIEYAITDFLA--THPIKD 261
YFQS+K++ S P++ + G P L G++V I S + DF+ T PI+D
Sbjct: 349 PYFQSHKIVVKSNY-PIRQVLGKPDLAGRMVAGNIKSQ------VLADFVVELTSPIQD 400
>IMGA|AC135504_4.1 gag-pol polyprotein, related AC135504.61
17375-18058 H EGN_Mt090430 20090702
Length = 227
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 14/141 (9%)
Query: 139 PKIGNPLILYLTV*DAEISPMLAQVDEARV*KAIYYFNKKLLPNEQKYNLIERTCLAMVL 198
P+ G L LYL++ +S +L + + A K++Y+ +KKLL E + IE+ LA++
Sbjct: 55 PEQGEVLYLYLSISSTAVSAVLIR-ETAEGQKSVYFTSKKLLGPETRNQKIEKVALALLT 113
Query: 199 ATRKLRHYFQSYKVIAVSRMNPMKYLYGTPALVGKLVRWLILSSEFDIEY---------A 249
A+++LR YF ++ VI V P++ + G P + G++++W + SEFDI Y
Sbjct: 114 ASQRLRQYFFAHTVI-VKIDQPIRQILGRPNVAGRMMKWSLELSEFDIHYESRKALKAQV 172
Query: 250 ITDFLA--THPIKDN-EQWKI 267
DFL T P + N E+W +
Sbjct: 173 FADFLTEMTFPTEYNTEEWTV 193
>IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
12064249-12070465 E EGN_Mt090430 20090702
Length = 152
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 41/57 (71%)
Query: 36 LVTKFETFYY*VMLFGLKNVGATDQRMDTTLFYEMIHKEIEVYIDDMIIMIKTLEEH 92
+T + TF Y VM FGL N GAT QR TTLF++MIHKE+EVY+DDMI+ E+H
Sbjct: 82 FITPWGTFCYKVMSFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQH 138
>IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
5661429-5660887 H EGN_Mt090430 20090702
Length = 180
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%)
Query: 44 YY*VMLFGLKNVGATDQRMDTTLFYEMIHKEIEVYIDDMIIMIKTLEEHPTTLEWFIGRV 103
+Y VM F LKNVG T QRM +F + I ++V +DDMI+ + +H + L +V
Sbjct: 67 FYVVMSFKLKNVGVTYQRMMNEVFKDEIRDMLKVCMDDMIVKYREELDHMSHLNVVFIKV 126
Query: 104 IKYKLLLNRKKCAFGVTSSKVLAFIVGPKGIEIDP 138
KY + N + C FGV ++K + + KGI+++P
Sbjct: 127 RKYNMHSNLENCTFGVKAAKFMGLYLTEKGIKVNP 161
>IMGA|Medtr3g059210.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
13291307-13288982 H EGN_Mt090430 20090702
Length = 695
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 139 PKIGNPLILYLTV*DAEISPMLAQVDEARV*KAIYYFNKKLLPNEQKYNLIERTCLAMVL 198
PK+ PLILYL V + S L Q + + K +Y+ +K L E +Y IE+ LA+V
Sbjct: 89 PKLSAPLILYLAVSEHACSSALVQ-EVRKEQKPVYFTSKVLHGAEVRYQKIEKVALALVS 147
Query: 199 ATRKLRHYFQSYKVIAVSRMNPMKYLYGTPALVGKLV 235
+ RKLR YFQS+ +I V P++ + P L G+++
Sbjct: 148 SARKLRPYFQSHTII-VRTNQPIRQVLQKPDLAGRMI 183
>IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC234026.1 2154-4412 H EGN_Mt090430
20090702
Length = 705
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 38 TKFET----FYY*VMLFGLKNVGATDQRMDTTLFYEMIHKEIEVYIDDMIIMIKTLEEHP 93
T F T + Y VM FGL N AT Q +F + K + V+ DD++I K L EH
Sbjct: 260 TAFRTHNGHYEYLVMPFGLMNAPATFQSTMNDIFRPFLRKFVLVFFDDILIYSKDLAEHQ 319
Query: 94 TTLEWFIGRVIKYKLLLNRKKCAFGVTSSKVLAFIVGPKGIEIDPPKI 141
+ L + + + N KC FG L ++ KG+ +DP KI
Sbjct: 320 SHLNQVLTILFSNCFVANLSKCKFGCVEVDYLGHVISGKGVAVDPEKI 367
>IMGA|Medtr6g077290.1 Ribonuclease H, putative
chr06_pseudomolecule_IMGAG_V3 15274861-15275193 H
EGN_Mt090430 20090702
Length = 110
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 138 PPKIGNPLILYLTV*DAEISPMLAQVDE-ARV*KAIYYFNKKLLPNEQKYNLIERTCLAM 196
PP G PLILYL+V D + +L Q DE + AIYY +KK E +Y ++E+TC A+
Sbjct: 50 PPVEGRPLILYLSVFDESVGCVLGQRDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCAL 109
Query: 197 V 197
Sbjct: 110 A 110
>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 9673679-9667953 H
EGN_Mt090430 20090702
Length = 1435
Score = 51.2 bits (121), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 47 VMLFGLKNVGATDQRMDTTLFYEMIHKEIEVYIDDMIIMIKTLEEHPTTLEWFIGRVIKY 106
VM FGL N A+ Q + +F ++ + + V+ DD+++ T H LE + + +
Sbjct: 705 VMPFGLSNAPASFQNLMNKVFCNLLRRSVLVFFDDILVYSPTWHAHLAHLEEVLQLLQTH 764
Query: 107 KLLLNRKKCAFGVTSSKVLAFIVGPKGIEIDPPKI 141
L KC FG+T L V +G+ +D K+
Sbjct: 765 SLFAKISKCCFGMTQIDYLGHTVSGQGVAMDCSKV 799
>IMGA|Medtr6g077300.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V3
15275252-15275869 F EGN_Mt090430 20090702
Length = 179
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
Query: 218 MNPMKYLYGTPALVGKLVRWLILSSEFDIEYA---------ITDFLATHPIKDNEQWKID 268
M+P+KY++ + GK+ RW +L SE+DI + + D LA P+ D + + D
Sbjct: 1 MDPIKYIFEKAVVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFD 60
Query: 269 FPNEHLNLIEKKE 281
FP+E + ++ K+
Sbjct: 61 FPDEEIMYLKSKD 73