Jatropha Genome Database

JcCA0305711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0305711.10 + phase: 0 
         (243 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g023440.1 Zinc finger, C2H2-type chr01_pseudomolecule...   139   1e-33
IMGA|Medtr1g135260.1 Zinc finger, C2H2-type chr01_pseudomolecule...   138   2e-33
IMGA|Medtr4g036160.1 Zinc finger, C2H2-type chr04_pseudomolecule...    49   2e-06
IMGA|Medtr5g046750.1 Zinc finger, C2H2-type chr05_pseudomolecule...    48   4e-06

>IMGA|Medtr1g023440.1 Zinc finger, C2H2-type
           chr01_pseudomolecule_IMGAG_V3 5223325-5222425 E
           EGN_Mt090430 20090702
          Length = 232

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/238 (42%), Positives = 118/238 (49%), Gaps = 16/238 (6%)

Query: 1   MALEALNSPTTATP-FNYEDTWTKRKRSKRPRGESPPTEEEYLALCLIMLARGGSTSPTA 59
           MALEALNSPT+ TP F +++      + KR +     TEEEYLALCLIMLARG +     
Sbjct: 1   MALEALNSPTSTTPKFTFDEPNLPWTKRKRSKRSRSCTEEEYLALCLIMLARGHTNRHDF 60

Query: 60  EEIAST-SXXXXXXXALNLSYKCTVCNKAFPSYQALGGHKXXXXXXXXXXXXXXXXXXXX 118
             +    +          LSYKC+VCNK F SYQALGGHK                    
Sbjct: 61  NPLNPPPTTIDNNNNNTKLSYKCSVCNKEFSSYQALGGHK----ASHRKNSVGGGGDDHP 116

Query: 119 XXXXXXXXXXXXXXXXXXXXHECSICHKTFPTGQALGGHKRRHYEGPVGGHNHSSSAVTX 178
                               HECSICH++FPTGQALGGHKR HYEG VGG    +SAVT 
Sbjct: 117 STSSAATTSSANTNGGGVRSHECSICHRSFPTGQALGGHKRCHYEGVVGG---GASAVTV 173

Query: 179 XXXXXXXXXXXXXXXFEFDLNLPALPELWPGNREQEVESPLP---GKKPRLSLLLKQE 233
                           +FDLN+PA PE      E EVESP P    KK R+ ++ K E
Sbjct: 174 SEGMGSTHSHQR----DFDLNIPAFPEFANKVGEDEVESPHPVMMKKKARVFVVPKIE 227


>IMGA|Medtr1g135260.1 Zinc finger, C2H2-type
           chr01_pseudomolecule_IMGAG_V3 30191745-30192834 E
           EGN_Mt090430 20090702
          Length = 251

 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/265 (39%), Positives = 124/265 (46%), Gaps = 65/265 (24%)

Query: 1   MALEALNS-PTTAT-----PF-------NYE-DTWTKRKRSKRPRGE--SPPTEEEYLAL 44
           + L+ LNS PT AT     PF       N E ++  K+KRSKRPR    +PPTEEEYLAL
Sbjct: 3   LELQTLNSSPTGATTTIPIPFPRFKQEENQERESLVKKKRSKRPRIGIGNPPTEEEYLAL 62

Query: 45  CLIMLARGGSTSPTAEEIASTSXXXXXXXALNLSYKCTVCNKAFPSYQALGGHKXXXXXX 104
           CLIML              S S        L L++KC+VCNKAFPSYQALGGHK      
Sbjct: 63  CLIML--------------SQSNNQIQSSPLKLNHKCSVCNKAFPSYQALGGHKASHRKS 108

Query: 105 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKTFPTGQALGGHKRRHYEG 164
                                             HECSICHK+FPTGQALGGHKR HYEG
Sbjct: 109 SSENQSTTVNETISVSVSTSKM------------HECSICHKSFPTGQALGGHKRCHYEG 156

Query: 165 PVGGHNHSSSAVTXXXXXXXXXXXXXXXXFE-FDLNLPA-LPELW--------------- 207
            +  +++ +++ +                   FDLNLPA L E W               
Sbjct: 157 VINNNHNHNNSNSSGITVSDAGAASSSISHRGFDLNLPAPLTEFWSPVGFGGGDSKKNKV 216

Query: 208 ----PGNREQEVESPLP--GKKPRL 226
                G  EQEVESPLP   K+PRL
Sbjct: 217 NVNLAGINEQEVESPLPVTAKRPRL 241


>IMGA|Medtr4g036160.1 Zinc finger, C2H2-type
           chr04_pseudomolecule_IMGAG_V3 8812372-8810265 H
           EGN_Mt090430 20090702
          Length = 461

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/24 (75%), Positives = 22/24 (91%)

Query: 139 HECSICHKTFPTGQALGGHKRRHY 162
           HECSICH++F +GQALGGHKR H+
Sbjct: 287 HECSICHRSFSSGQALGGHKRCHW 310


>IMGA|Medtr5g046750.1 Zinc finger, C2H2-type
           chr05_pseudomolecule_IMGAG_V3 19675613-19674069 E
           EGN_Mt090430 20090702
          Length = 514

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 3/38 (7%)

Query: 139 HECSICHKTFPTGQALGGHKRRHYEGPVGGHNHSSSAV 176
           HEC IC+K F +GQALGGHKR H+   +GG++ ++  +
Sbjct: 436 HECPICNKIFKSGQALGGHKRSHF---IGGNDDNTLVI 470