Jatropha Genome Database

JcCA0305691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0305691.10 + phase: 0 /partial
         (218 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g107470.1 Leucine-rich repeat chr02_pseudomolecule_IM...    54   6e-08

>IMGA|Medtr2g107470.1 Leucine-rich repeat
           chr02_pseudomolecule_IMGAG_V3 25297405-25292730 E
           EGN_Mt090430 20090702
          Length = 468

 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 136 ELDAIDNGETSFADFFSVNYVESSKHSVEKKLIDKAGENINSTGGLVTLSAKKKKTKNRV 195
           E D ID+ E SFA+ F++   E+  H  E KL D+  +++     + TL  K K  K   
Sbjct: 388 EFDIIDDAEASFAEIFNIKDQENLNHGGEMKLQDQVPKDLKLVSSIETLPVKHKSAKMHN 447

Query: 196 ANHAVQLPAEVEVGMGGPSTWDD 218
              ++  P   E+GMGGPSTW D
Sbjct: 448 V-ESLSSPG-TEIGMGGPSTWGD 468