Jatropha Genome Database

JcCA0305451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0305451.10 - phase: 0 /pseudo/partial
         (664 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g025590.1 Nuclear pore protein 84/107 chr08_pseudomol...   488   e-138
IMGA|Medtr8g025580.1 Nuclear pore protein 84/107 chr08_pseudomol...   330   2e-90

>IMGA|Medtr8g025590.1 Nuclear pore protein 84/107
           chr08_pseudomolecule_IMGAG_V3 5237274-5234210 E
           EGN_Mt090430 20090702
          Length = 309

 Score =  488 bits (1257), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 228/302 (75%), Positives = 262/302 (86%), Gaps = 2/302 (0%)

Query: 1   VRGSHVGTYLPNSGIWHHTQRLLKKGASNTNTVHHLDFDAPTREHAHQLPDDKKQDESLL 60
           VRGSHVG+YLP+SG+WHHTQR L KG S+ N VHHLDFDAPTRE+A+ LPDDKKQDESLL
Sbjct: 5   VRGSHVGSYLPSSGVWHHTQRYLNKGTSDRNVVHHLDFDAPTRENANILPDDKKQDESLL 64

Query: 61  EDVWTLLRAGRLEEACDLCRSAGQPWRAATLCPFGGLDLAPSIEALVKNGKNRTLQAIEL 120
           EDVWTLLRAGRLEEAC LCRSAGQPWRA++LCPFGGL+L PS+EAL KNGKNRTLQA+E 
Sbjct: 65  EDVWTLLRAGRLEEACGLCRSAGQPWRASSLCPFGGLNLFPSVEALAKNGKNRTLQAVEF 124

Query: 121 ESGIGQQWRLWKWASFCASEKIAEQNGGKYEVAVYASQCSDLKRMLPICTDWESACWAMA 180
           ESGIG QW LWKWAS+CASEKI+E  GGKYE AVYA+QCS+L++MLP+CTDWESACWAMA
Sbjct: 125 ESGIGHQWHLWKWASYCASEKISEL-GGKYEAAVYAAQCSNLRQMLPLCTDWESACWAMA 183

Query: 181 KSWLDVQVDLELARSQP-GRIEQLKSYGDDIDGSPGQIDSASHPSIGPEGWPLHVLNQQP 239
           KSWLDVQ+DLE+ RS P G + QL ++GD +D SPGQ+D +  PS GPE WP+ VLNQQP
Sbjct: 184 KSWLDVQIDLEVTRSLPGGGVNQLGTFGDVMDRSPGQVDGSFDPSNGPENWPIQVLNQQP 243

Query: 240 RDFSALLQKLHSGETINEAVARGCKEQQRQIEMDLMLGNIPHLLDMIWAWITPSEDDQNV 299
           R  S+LLQKLHSGE I+E V R CKEQQRQI+M LML +IP +LD+IW+WI P EDDQNV
Sbjct: 244 RQLSSLLQKLHSGEMIHETVTRQCKEQQRQIQMTLMLADIPRVLDLIWSWIAPVEDDQNV 303

Query: 300 FR 301
           FR
Sbjct: 304 FR 305


>IMGA|Medtr8g025580.1 Nuclear pore protein 84/107
           chr08_pseudomolecule_IMGAG_V3 5233063-5223802 E
           EGN_Mt090430 20090702
          Length = 514

 Score =  330 bits (845), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 162/246 (65%), Positives = 191/246 (77%), Gaps = 2/246 (0%)

Query: 420 STITNVKDVSVKLLLRALMHSNILFREFSLISMWRIPAMPIGAHTLLSLLAEPLKQLSEI 479
           STI NVKDVS KLLLRAL+HSN+LFREF+LISMWR+PAMPIGAHT L  LAEPLKQL+E 
Sbjct: 157 STIANVKDVSKKLLLRALIHSNVLFREFALISMWRVPAMPIGAHTALGFLAEPLKQLAET 216

Query: 480 PDTLEDY-FSENLKEFQDWSEYYSCDATYRNWLKIELENAEVPPFELSMXXXXXXXXXXX 538
            +  +D+   E+L+EF++W EYYSCDATYRNWLKIE ENAEVP  ELS+           
Sbjct: 217 LEISDDHNVFEDLREFEEWREYYSCDATYRNWLKIESENAEVPVSELSLEEKERAISAAK 276

Query: 539 XXLNSSLSLLLRKENPWLTPVEDQAYESAAPTFLELHATAMLCLPSGECMCPDATICTAL 598
             L +SLSLL R+E  WL  + D  YESA   FLELHATAMLCLPSG+C+CPDAT+CT L
Sbjct: 277 ETLTASLSLLERRETHWLASI-DNIYESAESVFLELHATAMLCLPSGDCLCPDATVCTTL 335

Query: 599 MSALYSSVSEEIVLHRQLMVNVALSPRDNYCIEVVLRCLAVDGDGLGSHQANDGGILGTV 658
            SALYSS  +E+V +RQL+VN  +S RD+YCI+VVLRCLA+ GDGL  H  NDGGIL T+
Sbjct: 336 TSALYSSAGDEVVSNRQLVVNATISSRDHYCIDVVLRCLAIVGDGLRPHDFNDGGILSTI 395

Query: 659 MAAGFK 664
           +AAGFK
Sbjct: 396 IAAGFK 401



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 34/45 (75%), Gaps = 2/45 (4%)

Query: 308 MIRFGAHLVLVLRYL--LAEEMKDSFREKLMNVGDLILHMYVMFL 350
           MIRFGAHLVLVLRYL    EEMK +  +K++ VGD ILH+Y  FL
Sbjct: 1   MIRFGAHLVLVLRYLPEAREEMKGALMDKILTVGDHILHLYAKFL 45