Jatropha Genome Database
- JcCA0304431.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0304431.20 - phase: 0 /TE
(1368 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc... 357 3e-98
IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcrip... 331 1e-90
IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse transc... 330 3e-90
IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse transc... 275 9e-74
IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse transcri... 227 2e-59
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 186 7e-47
IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical, ch... 183 5e-46
IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse transc... 149 1e-35
IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse transc... 114 2e-25
IMGA|AC233082_2.1 RNA-directed DNA polymerase (Reverse transcrip... 107 6e-23
IMGA|AC233082_1.1 Polynucleotidyl transferase, Ribonuclease H fo... 100 7e-21
IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse transc... 100 8e-21
IMGA|Medtr5g062290.1 RNA-directed DNA polymerase (Reverse transc... 89 1e-17
IMGA|Medtr4g073740.1 polyprotein, putative chr04_pseudomolecule_... 87 4e-17
IMGA|AC233082_3.1 RNA-directed DNA polymerase (Reverse transcrip... 82 2e-15
IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse transc... 75 2e-13
IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse transc... 68 2e-11
IMGA|Medtr2g092710.1 Putative Ty3-gypsy-like retroelement pol po... 66 1e-10
IMGA|Medtr2g092480.1 Putative Ty3-gypsy-like retroelement pol po... 66 1e-10
IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse transc... 60 7e-09
IMGA|Medtr3g013220.1 Retrotransposon gag protein chr03_pseudomol... 60 8e-09
IMGA|Medtr8g078520.1 RNA-directed DNA polymerase ; Chromo; Zinc ... 58 4e-08
IMGA|Medtr6g065010.1 reverse transcriptase, putative chr06_pseud... 57 8e-08
IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 ... 53 1e-06
IMGA|Medtr5g062240.1 Enzymatic polyprotein, related chr05_pseudo... 52 2e-06
IMGA|Medtr4g079910.1 hypothetical protein chr04_pseudomolecule_I... 50 6e-06
>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 9673679-9667953 H
EGN_Mt090430 20090702
Length = 1435
Score = 357 bits (915), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 218/625 (34%), Positives = 340/625 (54%), Gaps = 19/625 (3%)
Query: 348 CRLIIDSCSCENLIAKQLVEKLNLPTERHPSPYKVGWIKEGPMIEVNXIYKVPISMGKSY 407
++++DS S EN + ++ + L LP E S +KV + G +EV + +++
Sbjct: 389 VQILLDSGSSENFLQPRIAKFLQLPIEPA-SQFKV-LVGNGQSLEVAGLVSNLQVDIQNH 446
Query: 408 TDYVSCDVVEMDACGVLLGCPWXFDLDALHKGRENSYLFTCRNKKIIVLCFGFSTKASKV 467
+ ++ + ++LG PW L + Y+ I L K S+
Sbjct: 447 AISLPVYLLPLTGADLVLGAPWLASLGPHIADYKALYIKFHLGNTFITLYGEQIQKPSQA 506
Query: 468 E---EKSIAAVSSNVQEFS-SAIEKSGGALVLLIRPETNFEERALLPPLAKELLDEFQAI 523
K +A+ + + F ++ L+ + PE L P +LL ++ ++
Sbjct: 507 HFHHIKRLASTKAIAETFYLHLLDAQPPNLMSTVIPEN-------LDPALHDLLSKYSSV 559
Query: 524 VEDPSTLLPLWGIQHQIDFIPGSKIPNLPHYTMNLKESQILQEXVEELLKMGHIKENISP 583
+ P+ L P H I + S + Y + +++ V E+L+ G I+ + SP
Sbjct: 560 FQSPAGLPPCRQQDHAIPLLTDSNPVKVKPYRYAHSQKTQIEKMVLEMLQQGIIQPSSSP 619
Query: 584 CGVLALLLPKKDGTWKMCMDSRDINKITVQYRFPIPRLQDILDQLLRSTVFSKINLRSEY 643
LL+ KKDG+W+ C D R +N ITV+ FPIP + ++LD+L + FSK++L S Y
Sbjct: 620 FSSPVLLVKKKDGSWRFCTDYRALNAITVKDSFPIPTVDELLDELFGAAYFSKLDLLSGY 679
Query: 644 HQIQIKVGDEWKTAFKTKEGLYEWLVMPFGFTNATSTFMQLMIQVLHPFLCKFVVVYFDD 703
HQI +K D KTAF+T +GLYEWLVMPFG +NA ++F LM +V L + V+V+FDD
Sbjct: 680 HQILVKSEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQNLMNKVFCNLLRRSVLVFFDD 739
Query: 704 NLIFSCSEEEHLQHLRLVLNTLQENELFINLKKCSF-MTKEQILFLGYVVSSKGIHVDDR 762
L++S + HL HL VL LQ + LF + KC F MT QI +LG+ VS +G+ +D
Sbjct: 740 ILVYSPTWHAHLAHLEEVLQLLQTHSLFAKISKCCFGMT--QIDYLGHTVSGQGVAMDCS 797
Query: 763 KIEAIRNLPIPKNITEVHNFHGLATFYRLFIRNFSSIIAPITDCLKKERVHQFIWIEAAN 822
K++A+ + P P N+ ++ F GL +YR FI+ ++++ +P+TD LKK+ F W E A
Sbjct: 798 KVKAVLDWPTPTNLKQLRGFLGLTGYYRRFIQGYAAVASPLTDLLKKD---SFKWTENAQ 854
Query: 823 KSFEEIKDKLTSAPILALLNFDKLFEVDCDACGIGIGGVLSQSERPIAFFSEKLNEVRQR 882
+FE +K LT AP+L+L +F K F ++ DA G GIG VLSQ + PIAFFS+KL+ Q+
Sbjct: 855 LAFERLKQSLTKAPVLSLPDFSKSFVLETDASGFGIGAVLSQGKHPIAFFSKKLSPRMQK 914
Query: 883 WSTYEQELYVVYRAFKTWEHYLLGREFIIYTDNQALTHFKTQKTVSKMHARWAAYFGAFH 942
S Y +ELY + A + HYL+G +FII TD ++L Q + W F ++
Sbjct: 915 QSAYVRELYAISEAISKFRHYLIGHQFIIRTDQKSLKSLTDQAIQTPEQQNWLHKFLGYN 974
Query: 943 YIIKHKSGTCNMVADALSRRAALLI 967
+ I++K G N+ ADALSR L I
Sbjct: 975 FTIEYKPGKDNIAADALSRSLLLAI 999
>IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcriptase)
AC234026.1 2154-4412 H EGN_Mt090430 20090702
Length = 705
Score = 331 bits (849), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 190/492 (38%), Positives = 283/492 (57%), Gaps = 12/492 (2%)
Query: 540 IDFIPGSKIP-NLPHYTMNLKESQILQEXVEELLKMGHIKENISPCGVLALLLPKKDGTW 598
I+ P +K P N+ Y + + +++ V ELL G I+ ++S +L+ KKD +W
Sbjct: 143 IEQFPKAKGPINVRPYKYPHHQKEEIEKQVAELLAAGVIRPSMSAYSSPVILVKKKDKSW 202
Query: 599 KMCMDSRDINKITVQYRFPIPRLQDILDQLLRSTVFSKINLRSEYHQIQIKVGDEWKTAF 658
+MC+D R +NK + ++PIP + ++LD+L +T+FSKI+L+S YHQI++ D KTAF
Sbjct: 203 RMCVDYRALNKARIPDKYPIPVVDELLDELYGATIFSKIDLKSGYHQIRVHENDIHKTAF 262
Query: 659 KTKEGLYEWLVMPFGFTNATSTFMQLMIQVLHPFLCKFVVVYFDDNLIFSCSEEEHLQHL 718
+T G YE+LVMPFG NA +TF M + PFL KFV+V+FDD LI+S EH HL
Sbjct: 263 RTHNGHYEYLVMPFGLMNAPATFQSTMNDIFRPFLRKFVLVFFDDILIYSKDLAEHQSHL 322
Query: 719 RLVLNTLQENELFINLKKCSFMTKEQILFLGYVVSSKGIHVDDRKIEAIRNLPIPKNITE 778
VL L N NL KC F E + +LG+V+S KG+ VD KI I P PKN+
Sbjct: 323 NQVLTILFSNCFVANLSKCKFGCVE-VDYLGHVISGKGVAVDPEKIRCILEWPEPKNVKG 381
Query: 779 VHNFHGLATFYRLFIRNFSSIIAPITDCLKKERVHQFIWIEAANKSFEEIKDKLTSAPIL 838
V F GL +YR F++++ I P+T+ KK+ F W A ++F +K +TS +L
Sbjct: 382 VRGFLGLTGYYRKFVKDYGKIAKPLTELTKKD---GFSWSPTAAEAFNRLKHIMTSPLVL 438
Query: 839 ALLNFDKLFEVDCDACGIGIGGVLSQSERPIAFFSEKLNEVRQRWSTYEQELYVVYRAFK 898
L NF FE++CDA G GIG VL Q+++P+A+FS+ L+ S YE+EL + +
Sbjct: 439 VLPNFSLPFEIECDAAGRGIGAVLMQNKQPVAYFSKALSAGNLSKSVYEKELMALVLCIQ 498
Query: 899 TWEHYLLGREFIIYTDNQALTHFKTQKTVSKMHARWAAYFGAFHYIIKHKSGTCNMVADA 958
W HYLLG+ F ++TD+++L HF Q+ S W A + + +K+K G N ADA
Sbjct: 499 HWRHYLLGKAFTVHTDHKSLKHFLQQRVTSPDQQCWLAKLLGYQFEVKYKPGLENKAADA 558
Query: 959 LSR-----RAALLIIIRQEIVGFEFLKDLYALDEDFADIWAKI-HAKXLADGFLVHDWYL 1012
LSR LI + G + L+++ A D D I ++ + + + G+ V L
Sbjct: 559 LSRCHGDVDLKSLISYPTWLGGKQLLEEV-AKDPDIQKIMIEVQNQQEIKAGYEVKQGVL 617
Query: 1013 FKENKLCISRSS 1024
F + +L IS +S
Sbjct: 618 FYQGRLVISPTS 629
>IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse
transcriptase); Retrotransposon gag protein;
Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 42425246-42419198 E
EGN_Mt090430 20090702
Length = 1584
Score = 330 bits (846), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 175/481 (36%), Positives = 273/481 (56%), Gaps = 22/481 (4%)
Query: 511 PLAKELLDEFQAIVEDPSTLLPLWGIQHQIDFIPGSKIPNLPHYTMNLKESQILQEXVEE 570
P + LL+ + I +P L P H I +P + N+ Y + + + + +
Sbjct: 535 PEIQHLLNSYPTIFIEPHGLPPKRPHDHHIPLLPNTPPVNVKPYRYPHSQKEAMTTIIHD 594
Query: 571 LLKMGHIKENISPCGVLALLLPKKDGTWKMCMDSRDINKITVQYRFPIPRLQDILDQLLR 630
+L G I + SP LL+ KKDG+W+ C+D R +N +T+ RFPIP + ++ D+L
Sbjct: 595 MLHDGIIVPSTSPYSSPVLLVRKKDGSWRFCVDYRALNAVTICDRFPIPTIDELFDELGS 654
Query: 631 STVFSKINLRSEYHQIQIKVGDEWKTAFKTKEGLYEWLVMPFGFTNATSTFMQLMIQVLH 690
+++FSK +LRS YHQI++ D KT F+T +G YE+LVMPFG +NA STF M L
Sbjct: 655 ASLFSKTDLRSGYHQIRVVPEDTHKTTFRTFDGHYEFLVMPFGLSNAPSTFQSAMNDFLR 714
Query: 691 PFLCKFVVVYFDDNLIFSCSEEEHLQHLRLVLNTLQENELFINLKKCSFMTKEQILFLGY 750
P+L + S ++HL HLRL+L+ L + + KC F + I +LG+
Sbjct: 715 PYLRR-------------RSLDDHLIHLRLILDLLASHHFVAKMSKCVFAV-DTIDYLGH 760
Query: 751 VVSSKGIHVDDRKIEAIRNLPIPKNITEVHNFHGLATFYRLFIRNFSSIIAPITDCLKKE 810
++S KG+ D+ KI+AI + P P+++T + F GL +FYR F+R+++++ AP+TD L+
Sbjct: 761 IISHKGVQPDEDKIQAILSWPTPRSLTTLRGFLGLISFYRRFVRHYATLAAPLTDLLRST 820
Query: 811 RVHQFIWIEAANKSFEEIKDKLTSAPILALLNFDKLFEVDCDACGIGIGGVLSQSERPIA 870
+ F A +F ++K+++T+ P+L L NF KLF V+ DA + IG VLSQ P+A
Sbjct: 821 K---FTLNATAEAAFSKLKEQITTTPVLILPNFSKLFVVETDASAVAIGAVLSQEGPPLA 877
Query: 871 FFSEKLNEVRQRWSTYEQELYVVYRAFKTWEHYLLGREFIIYTDNQALTHFKTQKTVSKM 930
FFS+K+ Q S Y +E+Y + A K W YL+GR F IYTD ++L + Q +
Sbjct: 878 FFSKKMCNRMQSSSVYVREMYAITEAIKKWHQYLIGRHFHIYTDQKSLKNLLVQTIQTPE 937
Query: 931 HARWAAYFGAFHYIIKHKSGTCNMVADALSRR----AALLIIIRQEI-VGFEFLKDLYAL 985
+W + F++ +K G N VADALSRR + L++ + I V + L+D Y
Sbjct: 938 QQKWVSKLQGFNFEFFYKPGKANQVADALSRRTSEESTLILAVSSPIPVLLQQLRDFYTT 997
Query: 986 D 986
D
Sbjct: 998 D 998
>IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
7081109-7063368 E EGN_Mt090430 20090702
Length = 377
Score = 275 bits (704), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 153/391 (39%), Positives = 225/391 (57%), Gaps = 20/391 (5%)
Query: 571 LLKMGHIKENISPCGVLALLLPKKDGTWKMCMDSRDINKITVQYRFPIPRLQDILDQLLR 630
+L G I+ + P LL+ KK G+W+ C+D R +N I + RFP+P + ++LD L +
Sbjct: 1 MLSSGLIQPSRGPFSSHVLLVKKKVGSWRCCVDYRALNAI--KDRFPLPTIDELLDDLGK 58
Query: 631 STVFSKINLRSEYHQIQIKVGDEWKTAFKTKEGLYEWLVMPFGFTNATSTFMQLMIQVLH 690
++ FSK++L+ +HQI++ D KTAF+T G YE VMPFG NA STF M +
Sbjct: 59 ASWFSKLDLQQGFHQIRMAPEDIPKTAFRTHHGHYECKVMPFGLCNAPSTFKSTMNNLFQ 118
Query: 691 PFLCKFVVVYFDDNLIFSCSEEEHLQHLRLVLNTLQENELFINLKKCSFMTKEQILFLGY 750
PFL KF +HL HL+L+L L E + F+ KC F + Q+ +LG+
Sbjct: 119 PFLRKFAA--------------DHLTHLQLILTKLLEAQFFLKQSKCLF-GQRQLEYLGH 163
Query: 751 VVSSKGIHVDDRKIEAIRNLPIPKNITEVHNFHGLATFYRLFIRNFSSIIAPITDCLKKE 810
++S KGI D K++A+ P P + T + F GL FYR FI+ ++SI AP+T+ LKK+
Sbjct: 164 IISQKGIQADPSKLQAMVEWPQPTSTTLLRRFLGLTGFYRKFIKGYASIAAPLTNLLKKD 223
Query: 811 RVHQFIWIEAANKSFEEIKDKLTSAPILALLNFDKLFEVDCDACGIGIGGVLSQSERPIA 870
FIW A SF+ +K +T AP LA+ +F F+++ DA +G VL Q PIA
Sbjct: 224 ---SFIWSPEAEHSFQTLKKAMTEAPTLAVPDFTLPFDLETDASAKAMGAVLMQQNHPIA 280
Query: 871 FFSEKLNEVRQRWSTYEQELYVVYRAFKTWEHYLLGREFIIYTDNQALTHFKTQKTVSKM 930
FFS++L + R STY +EL+ + A K W YLLG F I+TD+++L +Q +
Sbjct: 281 FFSKQLCQRLLRSSTYVRELHAITTAVKKWRQYLLGHPFTIHTDHKSLKELISQVIQTPE 340
Query: 931 HARWAAYFGAFHYIIKHKSGTCNMVADALSR 961
+ + + I+ KSG N+VADALSR
Sbjct: 341 QQVYLSKLLGYDVKIQFKSGKTNVVADALSR 371
>IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase, Ribonuclease
H fold AC229695.5 96798-94993 H EGN_Mt090430 20090702
Length = 555
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/358 (36%), Positives = 198/358 (55%), Gaps = 19/358 (5%)
Query: 685 MIQVLHPFLCKFVVVYFDDNLIFSCSEEEHLQHLRLVLNTLQENELFINLKKCSFMTKEQ 744
M +VL P+L KF +V+FDD L++S E H HL VL L+E++L N KKC+F + Q
Sbjct: 1 MNEVLRPYLRKFALVFFDDILVYSKDVEHHKHHLGAVLALLKEHQLVANYKKCTF-GQHQ 59
Query: 745 ILFLGYVVSSKGIHVDDRKIEAIRNLPIPKNITEVHNFHGLATFYRLFIRNFSSIIAPIT 804
+ +LG+++S++G+ D +K++ + P PK++ + F GL +YR F+RN+ SI P+T
Sbjct: 60 LEYLGHIISAQGVAADQKKVDVMLTWPRPKDLKSLRGFLGLTGYYRRFVRNYGSIAKPLT 119
Query: 805 DCLKKERVHQFIWIEAANKSFEEIKDKLTSAPILALLNFDKLFEVDCDACGIGIGGVLSQ 864
LKK+ F+W E A SF+ +K + PIL++ NF F ++ DA G+G +L Q
Sbjct: 120 HLLKKD---NFLWNEEAQLSFDTLKKAMAELPILSVPNFSIPFVIETDASNTGLGAILMQ 176
Query: 865 SERPIAFFSEKLNEVRQRWSTYEQELYVVYRAFKTWEHYLLGREFIIYTDNQALTHFKTQ 924
RP+AF S+ L+E QR S YE+EL + A + W HYL+G FII+TD ++L + Q
Sbjct: 177 QGRPVAFLSQPLSERAQRKSIYERELMAIVFAVQKWRHYLMGNHFIIHTDQKSLKFLQDQ 236
Query: 925 KTVSKMHARWAAYFGAFHYIIKHKSGTCNMVADALSRRAALLIIIRQEIVGFEFLKDLYA 984
+ + +W + F + I +K G+ N ADALSRR I +E +
Sbjct: 237 RVLGADQFKWTSKLMGFDFEIIYKPGSDNRAADALSRRMTYAAISMIHFADYEEWEAEVM 296
Query: 985 LDEDFADIWAKIHAKXLADG-----FLVHDWYLFKENKLCISRSS------IQEKRSS 1031
D I IH +ADG + + LF + KL + R+S +QE SS
Sbjct: 297 HDNKLQTI---IHDL-IADGASHPNYSFQNRKLFYKGKLVLPRNSSKIPTLLQEYHSS 350
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 186 bits (472), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 206/409 (50%), Gaps = 27/409 (6%)
Query: 591 LPKKDGTWKMCMDSRDINKITVQYRFPIPRLQDILDQLLRSTVFSKINLRSEYHQIQIKV 650
+PKKDG +M +D RD+NK + + FP+P + ++D +S VFS ++ S Y+QI++
Sbjct: 147 VPKKDGKVRMSVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSP 206
Query: 651 GDEWKTAFKTKEGLYEWLVMPFGFTNATSTFMQLMIQVLHPFLCKFVVVYFDDNLIFSCS 710
D KT+F T G + + VMPFG NA +T+ + M + H + K V VY DD ++ S
Sbjct: 207 EDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTD 266
Query: 711 EEEHLQHLRLVLNTLQENELFINLKKCSFMTKEQILFLGYVVSSKGIHVDDRKIEAIRNL 770
EE+H+++L + L++ +L +N KC+F + L LG++VS KGI VD K+ AIR +
Sbjct: 267 EEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKL-LGFIVSQKGIEVDPDKVRAIREM 325
Query: 771 PIPKNITEVHNFHGLATFYRLFIRNFSSIIAPITDCLKKERVHQFIWIEAANKSFEEIKD 830
P P+ +V F G + FI + ++ PI L+K + +W + ++F+ IK+
Sbjct: 326 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQ--PVVWNDECQEAFDSIKN 383
Query: 831 KLTSAPILA-------LLNFDKLFEVDCDACGIGIGGVLSQSERPIAFFSEKLNEVRQRW 883
L PIL L+ + +F+ + C +G + E I + S+K + R+
Sbjct: 384 YLLEPPILVPPVEGRPLIMYLAVFD-ESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRY 442
Query: 884 STYEQELYVVYRAFKTWEHYLLGREFIIYTDNQALTHFKTQKTVSKMHARWAAYFGAFHY 943
+ E+ + A K HYL+ + + + + + V+ ARW ++
Sbjct: 443 TMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYYI 502
Query: 944 IIK-HKSGTCNMVADALSRRAALLIIIRQEIVGFEFLKDLYALDEDFAD 991
+ K K+ +++AD L+ ++ L D ++ DF D
Sbjct: 503 VFKTQKAIKGSILADHLA---------------YQPLDDYQPIEFDFPD 536
>IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical,
chr05_pseudomolecule_IMGAG_V3 20065664-20063904 H
EGN_Mt090430 20090702
Length = 460
Score = 183 bits (465), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/273 (41%), Positives = 151/273 (55%), Gaps = 51/273 (18%)
Query: 758 HVDDRKIEAIRNLPIPKNITEVHNFHGLATFYRLFIRNFSSIIAPITDCLKKERVHQFIW 817
VD+ K+ AIR+ P P ++TE +FHGLATFYR FIR FS I APIT CL+K ++ W
Sbjct: 168 QVDEEKVRAIRDWPAPTSVTEKRSFHGLATFYRRFIRYFSIITAPITKCLEKGKLK---W 224
Query: 818 IEAANKSFEEIKDKLTSAPILALLNFDKLFEVDCDACGIGIGGVLSQSERPIAFFSEKLN 877
+SF IK KL +AP+L L NF+K+F+V+CD
Sbjct: 225 GSEQEQSFALIKKKLCAAPVLPLPNFEKVFQVECDDS----------------------- 261
Query: 878 EVRQRWSTYEQELYVVYRAFKTWEHYLLGREFIIYTDNQALTHFKTQKTVSKMHARWAAY 937
A + WEHYL+ REFI++TD+QAL +QK ++K AR
Sbjct: 262 ------------------ALRQWEHYLIHREFILFTDHQALKFLHSQKVINK-DARSVGE 302
Query: 938 FGA--FHYIIKHKSGTCNMVADALSRRAALLIIIRQEIVGFEFLKDLYALDEDFADIWAK 995
F A F +II+HK G N VADALSRRA L+ + QE+V FE LK+L+ D F ++ AK
Sbjct: 303 FSAKIFPFIIQHKYGALNKVADALSRRAYFLVTLSQEVVDFECLKELHESDAKFKELKAK 362
Query: 996 IHAKXLADGFLVHDWYLFKENKLCISRSSIQEK 1028
+ AD F + + YLF LCI S +++K
Sbjct: 363 CKERPCAD-FYIREGYLF---ILCIPCSPLRDK 391
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 122/174 (70%), Gaps = 16/174 (9%)
Query: 516 LLDEFQAIVEDPSTLLP-LWGIQHQIDFIPGSKIPNLPHYTMNLKESQILQEXVEELLKM 574
L D + I+E+ S LP + IQH+ID IP S +PNLPHY M+ KE++I++E +E+LL+
Sbjct: 11 LKDFNELIIEELSNDLPSMRDIQHKIDLIPCSSLPNLPHYRMSSKENEIVREQIEDLLRK 70
Query: 575 GHIKENISPCGVLALLLPKKDGTWKMCMDSRDINKITVQYRFPIPRLQDILDQLLRSTVF 634
G I+E++S C V LL+PKK W+ C++SR INKIT++Y+FPIPRL+D+LD
Sbjct: 71 GFIRESMSSCDVPVLLVPKKGNQWRKCVESRVINKITIKYQFPIPRLEDMLD-------- 122
Query: 635 SKINLRSEYHQIQIKVGDEWKTAFKTKEGLYEWLVMPFGFTNATSTFMQLMIQV 688
E+ ++I+ GDE +T FK+K+GLYE LVMPF +NA STFM+LM QV
Sbjct: 123 -------EFQNLRIRPGDERQTYFKSKDGLYESLVMPFRLSNAPSTFMRLMNQV 169
>IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
5672480-5674573 E EGN_Mt090430 20090702
Length = 253
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 124/207 (59%), Gaps = 1/207 (0%)
Query: 591 LPKKDGTWKMCMDSRDINKITVQYRFPIPRLQDILDQLLRSTVFSKINLRSEYHQIQIKV 650
+PKKDG +MC+D RD+NK + + FP+P + ++D +S VFS ++ S Y+QI++
Sbjct: 15 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSP 74
Query: 651 GDEWKTAFKTKEGLYEWLVMPFGFTNATSTFMQLMIQVLHPFLCKFVVVYFDDNLIFSCS 710
D KT+F T G + + VMPFG NA +T+ + M + H + K V VY DD ++ S
Sbjct: 75 EDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTD 134
Query: 711 EEEHLQHLRLVLNTLQENELFINLKKCSFMTKEQILFLGYVVSSKGIHVDDRKIEAIRNL 770
EE+H+++L + L++ +L +N KC+F + L LG+VVS KGI VD K+ AIR +
Sbjct: 135 EEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKL-LGFVVSQKGIEVDPDKVRAIREM 193
Query: 771 PIPKNITEVHNFHGLATFYRLFIRNFS 797
P P+ +V F G + FI + +
Sbjct: 194 PAPQTEKQVRGFLGRLNYISRFISHMT 220
>IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr03_pseudomolecule_IMGAG_V3 14037305-14035821 H
EGN_Mt090430 20090702
Length = 479
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 138/285 (48%), Gaps = 6/285 (2%)
Query: 556 MNLKESQILQEXVEELLKMGHIKENISPCGVL-ALLLPKKDGTWKMCMDSRDINKITVQY 614
M + +++ E V++L+ I E P + +L+ K++G W+MC+D D+N + +Y
Sbjct: 1 MGEERRKVVDEEVKKLVDARFISEIKYPTWLANTVLVKKENGKWRMCVDYTDLNMVCPKY 60
Query: 615 RFPIPRLQDILDQLLRSTVFSKINLRSEYHQIQIKVGDEWKTAFKTKEGLYEWLVMPFGF 674
+P+P + ++D S ++ S Y+QI++ D KTAF T Y + VM FG
Sbjct: 61 PYPLPNIDHLIDNASGFKTLSFMDAYSGYNQIRMDPLDAPKTAFMTNTKNYHYEVMYFGL 120
Query: 675 TNATSTFMQLMIQVLHPFLCKFVVVYFDDNLIFSCSEEEHLQHLRLVLNTLQENELFINL 734
NA +TF + M + + VY DD + + H L +L +++ + +N
Sbjct: 121 KNAGATFQRSMDTAFSQQIGRNREVYIDDLVAKTKEGLSHTDDLEEILGQVRKYRIRLNP 180
Query: 735 KKCSFMTKEQILFLGYVVSSKGIHVDDRKIEAIRNLPIPKNITEVHNFHG-LATFYRLFI 793
KCSF + FLG++++ GI + K +AI N+ P N+ EV G LA R
Sbjct: 181 TKCSFGVQVG-KFLGFLLTRWGIEANTDKCQAIINMRSPSNVKEVQQLTGRLAALSRCLS 239
Query: 794 RNFSSIIAPITDCLKKERVHQFIWIEAANKSFEEIKDKLTSAPIL 838
+ KKE+ F W +F++IK L+S P+L
Sbjct: 240 CAGDKAFSFFASIKKKEK---FEWTAECEDAFQQIKMFLSSLPLL 281
>IMGA|AC233082_2.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233082.3 16661-16311 H EGN_Mt090430
20090702
Length = 116
Score = 107 bits (266), Expect = 6e-23, Method: Composition-based stats.
Identities = 50/116 (43%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Query: 670 MPFGFTNATSTFMQLMIQVLHPFLCKFVVVYFDDNLIFSCSEEEHLQHLRLVLNTLQENE 729
MPFG +NA S+F M +L P+L +FV+V+FDD LI+S + +HL HLRL+L+ L N+
Sbjct: 1 MPFGLSNAPSSFQSAMNDMLRPYLRRFVLVFFDDILIYSTNMADHLIHLRLILDLLVTNQ 60
Query: 730 LFINLKKCSFMTKEQILFLGYVVSSKGIHVDDRKIEAIRNLPIPKNITEVHNFHGL 785
L KC F E + +LG+V+S++G+ D K+ AI + P P ++T + F GL
Sbjct: 61 FVAKLSKCVFAV-ETVHYLGHVISAQGVKADPEKVTAITDWPKPHSLTALRGFLGL 115
>IMGA|AC233082_1.1 Polynucleotidyl transferase, Ribonuclease H fold
AC233082.3 16225-8671 H EGN_Mt090430 20090702
Length = 695
Score = 100 bits (248), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 92/196 (46%), Gaps = 25/196 (12%)
Query: 821 ANKSFEEIKDKLTSAPILALLNFDKLFEVDCDACGIGIGGVLSQSERPIAFFSEKLNEVR 880
A+K+F +K +T+ P+L L +F K F V+ DA + IG VLSQ P+AFFS+K+
Sbjct: 3 ADKAFTTLKIHMTTMPVLHLPDFSKTFVVETDASAVAIGAVLSQEGHPLAFFSKKMTPKM 62
Query: 881 QRWSTYEQELYVVYRAFKTWEHYLLGREFIIYTDNQALTHFKTQKTVSKMHARWAAYFGA 940
Q S Y +E++ V + IYTD ++L + QK + +WA+
Sbjct: 63 QAASVYVREMFAVTES--------------IYTDQKSLRNLLLQKIQTPEQQKWASKLQG 108
Query: 941 FHYIIKHKSGTCNMVADALSRRAALLIIIRQEIVGFEFLKDLYALDEDFADIWAKIHAKX 1000
F++ I ++ G N+ ADALSR+ I I F L + F +A
Sbjct: 109 FNFEIHYRPGKTNLAADALSRKTQATISIL-----FTMTSPLPTIITQFQKFYAS----- 158
Query: 1001 LADGFLVHDWYLFKEN 1016
LVHD E+
Sbjct: 159 -KGKTLVHDLLAVNED 173
>IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
12064249-12070465 E EGN_Mt090430 20090702
Length = 152
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 84/137 (61%)
Query: 591 LPKKDGTWKMCMDSRDINKITVQYRFPIPRLQDILDQLLRSTVFSKINLRSEYHQIQIKV 650
+PKKDG +MC+D RD+NK + + FP+P + ++D +S VFS ++ S Y+QI++
Sbjct: 15 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSP 74
Query: 651 GDEWKTAFKTKEGLYEWLVMPFGFTNATSTFMQLMIQVLHPFLCKFVVVYFDDNLIFSCS 710
D KT+F T G + + VM FG NA +T+ + M + H + K V VY DD ++ S
Sbjct: 75 EDREKTSFITPWGTFCYKVMSFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTD 134
Query: 711 EEEHLQHLRLVLNTLQE 727
EE+H+++L + L++
Sbjct: 135 EEQHVEYLTKMFERLRK 151
>IMGA|Medtr5g062290.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
21895306-21893422 E EGN_Mt090430 20090702
Length = 306
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 137/295 (46%), Gaps = 18/295 (6%)
Query: 681 FMQLMIQVLHPFLCKFVVVYFDDNLIFSCSE-EEHLQHLRLVLNTLQENELFINLKKCSF 739
F + M +L F F ++Y DD L+FS + ++H + + LVLN E+ + ++ KK +
Sbjct: 8 FQRRMDTILKEF-KDFCLIYIDDILVFSNKDLDDHFKKVELVLNKCFEHGVVLS-KKKAV 65
Query: 740 MTKEQILFLGYVVSSKGIHVDDRKIEAIRNLPIP-KNITEVHNFHGLATF--YRLFIRNF 796
+ + +I +LG + + +E ++ P K+ E+ F GL T+ Y FI+N
Sbjct: 66 VAQNKINYLGLEIEKGKFLMQKHVLEKLQKFPTKLKDKKELQRFLGLLTYISYEGFIKNL 125
Query: 797 SSIIAPITDCLKKERVHQFIWIEAANKSFEEIKDKLTSAPILALLNFDKLFEVDCDACGI 856
++ + LKK+ + + W E ++K+ P L + D L ++ DA
Sbjct: 126 AAESKLLQQKLKKDSI--WSWTEDDEVLITKLKNLCQDLPELYHPSDDDLIIIETDASNK 183
Query: 857 GIGGVLS------QSERPIAFFSEKLNEVRQRWSTYEQELYVVYRAFKTWEHYLLGREFI 910
GGV+ + E + S ++ + T+E+E V R + Y+L +EFI
Sbjct: 184 YWGGVMKAKPPGQKKELLCRYMSGTFSDSEINYPTHEKETLAVIRMLEKHRIYVLDKEFI 243
Query: 911 IYTDNQALTHFK--TQKTVSKMH--ARWAAYFGAFHYIIKHKSGTCNMVADALSR 961
+ TD+ + FK K K RW ++Y I H G N++AD LSR
Sbjct: 244 VRTDSTYVAGFKNINHKGTYKQGRLIRWQMKLAEYNYSISHIKGEKNVLADILSR 298
>IMGA|Medtr4g073740.1 polyprotein, putative
chr04_pseudomolecule_IMGAG_V3 14702170-14702511 H
EGN_Mt090430 20090702
Length = 113
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%)
Query: 832 LTSAPILALLNFDKLFEVDCDACGIGIGGVLSQSERPIAFFSEKLNEVRQRWSTYEQELY 891
+ PIL + +F K+F ++ DA G+G VL Q RP+AF S+ L++ Q YE+EL
Sbjct: 1 MAELPILTVPDFSKVFTIETDASNKGLGAVLLQEGRPVAFHSQNLSDRAQSKLVYERELM 60
Query: 892 VVYRAFKTWEHYLLGREFIIYTDNQALTHFKTQKTVSKMHARWAA 936
+ A + W HYLLGR FII TD ++L Q+ +++ +W +
Sbjct: 61 AIVTAVQKWRHYLLGRHFIILTDQKSLKLLVDQRLLNEEQFKWTS 105
>IMGA|AC233082_3.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein AC233082.3 19216-16757 H
EGN_Mt090430 20090702
Length = 819
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 124/301 (41%), Gaps = 37/301 (12%)
Query: 350 LIIDSCSCENLIAKQLVEKLNLPTERHPSPYKV-----------GWIKEGPMIEVNXIYK 398
+++D+ S N++ ++ L+L T P + V G + P+ N I+
Sbjct: 538 ILVDTGSTHNILQPRIASHLHLTTNSIPH-FSVMVGNGSHLDCQGICPDVPLTLQNKIFS 596
Query: 399 VPISMGKSYTDYVSCDVVEMDACGVLLGCPWXFDLDALHKGRE-NSYLFTCRNKKIIVLC 457
+P + ++ V+LG W L +H S F +N+ I
Sbjct: 597 LPFYL------------FPIEGADVVLGMAWLRTLGPIHADFAIPSITFIYQNESI---- 640
Query: 458 FGFSTKASKVEEKSIAAVSSNVQEFSSAIEKSGGALVLLIRPETNFEERALLP----PLA 513
T ++ + V + L+ + +++ LP P
Sbjct: 641 ----TLQGDPRQQPTQSTYPQVCHLLHTDAIASLHLLTFQPSQPPTQDKTPLPTATDPAV 696
Query: 514 KELLDEFQAIVEDPSTLLPLWGIQHQIDFIPGSKIPNLPHYTMNLKESQILQEXVEELLK 573
LL EF ++ P L P H I +P + N+ Y + + + ++L+
Sbjct: 697 ANLLSEFPSVFLKPHGLPPSRPHDHHIPLLPNTPPINVKPYRYPHSQKDAMTTLIRDMLQ 756
Query: 574 MGHIKENISPCGVLALLLPKKDGTWKMCMDSRDINKITVQYRFPIPRLQDILDQLLRSTV 633
G I + SP LL+ KKDGTW+ C+D R +N +TV+ RFPIP + ++LD+L +T+
Sbjct: 757 NGTIMPSTSPFSSPVLLVRKKDGTWRFCVDYRALNAVTVKDRFPIPTIDELLDELGAATI 816
Query: 634 F 634
F
Sbjct: 817 F 817
>IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
5661429-5660887 H EGN_Mt090430 20090702
Length = 180
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 91/177 (51%), Gaps = 3/177 (1%)
Query: 600 MCMDSRDINKITVQYRFPIPRLQDILDQLLRSTVFSKINLRSEYHQIQIKVGDEWKTAFK 659
M ++ D++++ + +P+ + ++D +FS ++ S Y+QI + DE KT F
Sbjct: 1 MSVEYSDLSRVCPKDTYPLINIDKLVDNSSGYKLFSFMDFFSMYNQIPLDPKDEDKTTFM 60
Query: 660 TKEGLYEWLVMPFGFTNATSTFMQLMIQVLHPFLCKFVVVYFDDNLIFSCSEEEHLQHLR 719
+ G + ++VM F N T+ ++M +V + + V DD ++ E +H+ HL
Sbjct: 61 VEAGNHFYVVMSFKLKNVGVTYQRMMNEVFKDEIRDMLKVCMDDMIVKYREELDHMSHLN 120
Query: 720 LVLNTLQENELFINLKKCSFMTKEQILFLGYVVSSKGIHV--DDRKIEAIRNLPIPK 774
+V +++ + NL+ C+F K F+G ++ KGI V D+ K E LP+ K
Sbjct: 121 VVFIKVRKYNMHSNLENCTFGVKAA-KFMGLYLTEKGIKVNPDNFKAEVDMELPMKK 176
>IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
13291757-13291422 H EGN_Mt090430 20090702
Length = 111
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 62/109 (56%)
Query: 600 MCMDSRDINKITVQYRFPIPRLQDILDQLLRSTVFSKINLRSEYHQIQIKVGDEWKTAFK 659
MC D ++NK+ + +P+P + ++ R + S ++ S Y++I++ + DE KTAF
Sbjct: 1 MCTDYTNLNKVCPKDAYPLPSIDQLVHNTSRYDLLSFMDAYSGYNKIRMHLEDEEKTAFM 60
Query: 660 TKEGLYEWLVMPFGFTNATSTFMQLMIQVLHPFLCKFVVVYFDDNLIFS 708
T + Y + MPFG N +TF +L+ +V + K + VY DD ++ S
Sbjct: 61 TDKANYCYKGMPFGLRNTGATFQRLVDKVFKSEIGKTIEVYVDDMVVKS 109
>IMGA|Medtr2g092710.1 Putative Ty3-gypsy-like retroelement pol
polyprotein, chr02_pseudomolecule_IMGAG_V3
21265601-21264986 H EGN_Mt090430 20090702
Length = 180
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 10 QNYKIKADLQSFSGSLDVESILDWLAEVECFFEIMNVEDERKASIVAYKLKGGAAAWWHS 69
+Y++KA + F G++ VE LDW +V FF++M+V D + +VA +LK A WW
Sbjct: 96 HDYRVKAYIPLFYGTMRVEEFLDWQIDVGRFFDVMDVPDSNQVKMVAMRLKNTATVWWDR 155
Query: 70 IQNERHRRRIEPVQ 83
+ +R R+R P++
Sbjct: 156 LVVQRQRQRKNPIR 169
>IMGA|Medtr2g092480.1 Putative Ty3-gypsy-like retroelement pol
polyprotein, chr02_pseudomolecule_IMGAG_V3
21138000-21137385 H EGN_Mt090430 20090702
Length = 180
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 10 QNYKIKADLQSFSGSLDVESILDWLAEVECFFEIMNVEDERKASIVAYKLKGGAAAWWHS 69
+Y++KA + F G++ VE LDW +V FF++M+V D + +VA +LK A WW
Sbjct: 96 HDYRVKAYIPLFYGTMRVEEFLDWQIDVGRFFDVMDVPDSNQVKMVAMRLKNTATVWWDR 155
Query: 70 IQNERHRRRIEPVQ 83
+ +R R+R P++
Sbjct: 156 LVVQRQRQRKNPIR 169
>IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
44106402-44105385 H EGN_Mt090430 20090702
Length = 308
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%)
Query: 589 LLLPKKDGTWKMCMDSRDINKITVQYRFPIPRLQDILDQLLRSTVFSKINLRSEYHQIQI 648
+L+ K +G W+M +D D+N++ + +P+P + ++D + S ++ Y+QI +
Sbjct: 223 VLVKKSNGKWRMSVDYTDLNRVCPKDAYPLPNIDKLVDNSSGFKLLSFMDAYFGYNQIPM 282
Query: 649 KVGDEWKTAFKTKEGLYEWLVMPFGF 674
GD+ KT F T+ G Y + VMPFG
Sbjct: 283 VEGDKMKTTFMTESGNYYYNVMPFGL 308
>IMGA|Medtr3g013220.1 Retrotransposon gag protein
chr03_pseudomolecule_IMGAG_V3 2466528-2465527 E
EGN_Mt090430 20090702
Length = 289
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 10 QNYKIKADLQSFSGSLDVESILDWLAEVECFFEIMNVEDERKASIVAYKLKGGAAAWWHS 69
+Y +KAD+ F G++ VE LDW +V+ FF+IM+V + + + A +LK AA WW
Sbjct: 49 HDYGVKADIPLFYGTMGVEEFLDWEIDVDRFFDIMDVLESKHVKMAANRLKSNAAVWWDR 108
Query: 70 IQNERHRRRIEPVQDW 85
+ +R R+R P++ W
Sbjct: 109 LVVQRRRQRKNPIRTW 124
>IMGA|Medtr8g078520.1 RNA-directed DNA polymerase ; Chromo; Zinc
finger, CCHC-type; Peptidase aspartic, active site;
Polynucleotidyl transferase, Ribonuclease H fold,
related chr08_pseudomolecule_IMGAG_V3 15990427-15992497
H EGN_Mt090430 20090702
Length = 218
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 824 SFEEIKDKLTSAPILALLNFDKLFEVDCDACGIGIGGVLSQSERPIAFFSEKLNEVRQRW 883
+FE +K K T++P+LAL F + F ++ DA G +G +L Q RPIA+FS+ L +
Sbjct: 27 AFEGLKHKGTASPVLALYYFSQEFYIESDASGNNLGAILLQKGRPIAYFSKALGDGNLTK 86
Query: 884 STYEQEL 890
+ YE++L
Sbjct: 87 AAYEKKL 93
>IMGA|Medtr6g065010.1 reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12073349-12073158 H
EGN_Mt090430 20090702
Length = 63
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 670 MPFGFTNATSTFMQLMIQVLHPFLCKFVVVYFDDNLIFSCSEEEHLQHLRLVLNTLQENE 729
MPFG NA S F +M Q+ P L FV+V+FD LI+ + +HL HL +V L +N+
Sbjct: 1 MPFGLCNAPSIFQAIMNQIFSPHLRCFVIVFFDAILIYIHTFHDHLIHLDIVFRYLMDNQ 60
Query: 730 LF 731
F
Sbjct: 61 FF 62
>IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 H
EGN_Mt090430 20090702
Length = 72
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 616 FPIPRLQDILDQLLRSTVFSKINLRSEYHQIQIKVGDEWKTAFKTKEGLYEWLVMPFGFT 675
+P+P + ++D +FS ++ S Y+QI + GD+ KTAF T+ G Y + VMPFG
Sbjct: 8 YPLPNIDKLVDNSSGYKLFSFMDTYSRYNQILMAEGDKKKTAFMTESGNYYYNVMPFGLR 67
Query: 676 NATST 680
N +T
Sbjct: 68 NMGAT 72
>IMGA|Medtr5g062240.1 Enzymatic polyprotein, related
chr05_pseudomolecule_IMGAG_V3 21860503-21859935 H
EGN_Mt090430 20090702
Length = 175
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 12/165 (7%)
Query: 807 LKKERVHQFIWIEAANKSFEEIKDKLTSAPILALLNFDKLFEVDCDACGIGIGGVL---- 862
LKK+ + + W E ++K+ P L + D L ++ DA GGV+
Sbjct: 5 LKKDSI--WSWTEDDEVLITKLKNLCQDLPELYHPSDDDLIIIETDASNKYWGGVMKAKP 62
Query: 863 --SQSERPIAFFSEKLNEVRQRWSTYEQELYVVYRAFKTWEHYLLGREFIIYTDNQALTH 920
+ E + S ++ + T+E+E + R + Y+L +EFI+ TD+ +
Sbjct: 63 PGQKKELLCRYMSGTFSDSEINYPTHEKETLALIRMLEKHRIYVLDKEFIVRTDSTYVAG 122
Query: 921 FK--TQKTVSKMHA--RWAAYFGAFHYIIKHKSGTCNMVADALSR 961
FK K K RW ++Y I H G N++AD LSR
Sbjct: 123 FKNINHKGTYKQGRLIRWQMKLAEYNYSISHIKGEKNVLADILSR 167
>IMGA|Medtr4g079910.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 16237771-16235290 E
EGN_Mt090430 20090702
Length = 813
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 36/50 (72%)
Query: 11 NYKIKADLQSFSGSLDVESILDWLAEVECFFEIMNVEDERKASIVAYKLK 60
+Y++KAD+ F G++ VE LDW +V+ FF++M+V + ++ +VA +LK
Sbjct: 73 DYRVKADIPLFYGTMGVEEFLDWEIDVDRFFDVMDVPESKQVKMVANRLK 122