Jatropha Genome Database

JcCA0304251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304251.10 - phase: 0 /TE
         (121 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H...    51   2e-07
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu...    48   1e-06
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po...    48   1e-06
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H...    46   5e-06

>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
           EGN_Mt090430 20090702
          Length = 1275

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%)

Query: 26  KVCHLKKALYALKQPPRDWFDRFSKAMISLGYQQRNVDHTTFIKNHQGKIIILIV 80
           +VC LKK+LY LKQ  R W+++ +  +I   Y Q + DH+ FIK       IL+V
Sbjct: 876 QVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYIQASSDHSLFIKKSSDSFTILLV 930


>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
           chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
           EGN_Mt090430 20090702
          Length = 293

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 26  KVCHLKKALYALKQPPRDWFDRFSKAMISLGYQQRNVDHTTFIKNHQGKIIILIV 80
           +VC L K+LY L+Q    W+++ +  +IS GY+Q   D + FIK+      IL+V
Sbjct: 122 EVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLV 176


>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
          polymerase chr05_pseudomolecule_IMGAG_V3
          33354025-33354392 H EGN_Mt090430 20090702
          Length = 108

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 35/54 (64%)

Query: 27 VCHLKKALYALKQPPRDWFDRFSKAMISLGYQQRNVDHTTFIKNHQGKIIILIV 80
          V  L+K+LY LKQ  R+W+ + S+A+I  G+Q+ + DH+ F  + +   + +++
Sbjct: 2  VYWLRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLI 55


>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
            EGN_Mt090430 20090702
          Length = 1396

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 27   VCHLKKALYALKQPPRDWFDRFSKAMISLGYQQRNVDHTTFIKNHQGKIIILIV 80
            VC L K+LY LKQ  R W+D+ +  ++   Y Q + DH+ F K       IL+V
Sbjct: 1005 VCKLNKSLYGLKQASRKWYDKLTSILLKHQYTQAHSDHSLFTKKTGTSYTILLV 1058