Jatropha Genome Database

JcCA0304141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304141.20 - phase: 0 
         (350 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC225507_13.1 U-box domain-containing protein 26, related A...   177   8e-45
IMGA|AC225517_29.1 U-box domain-containing protein 26, related A...   177   8e-45
IMGA|Medtr4g130110.1 U box; Armadillo-like helical chr04_pseudom...    66   2e-11

>IMGA|AC225507_13.1 U-box domain-containing protein 26, related
           AC225507.11 50842-51882 E EGN_Mt090430 20090702
          Length = 288

 Score =  177 bits (448), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 124/245 (50%), Positives = 146/245 (59%), Gaps = 19/245 (7%)

Query: 93  FTQWRFPLVNSPLHQHSPAETITQPKTDSPRALVPLPPPIHSDELQELFREAELQLSTGS 152
           FTQWRF  + +P    +       P      + +P         LQELF  +ELQ    S
Sbjct: 53  FTQWRFS-IPTPTSTPNTPPLPPPPPLPPFLSTIP--------NLQELFHVSELQ----S 99

Query: 153 ESEKLAALHLLERSLVPNPPSDPVCPLE-LMRGVVVNLKNKAGAKAATKILLALCLAEGN 211
            ++  AAL+LLERSLVPNPP D       LMR ++ NL+    +K ATKIL ALCL+E N
Sbjct: 100 TTDLNAALNLLERSLVPNPPQDQPPCPPNLMRALIRNLRE---SKPATKILFALCLSEAN 156

Query: 212 RHXXXXXXXXXXXXXXXXXXXXPVAERALAALELMCTVEEGAAELRAHALAMPVMVAKMG 271
           R                       AERALAALELMCTV EGA E+RAHALA+PVMV  MG
Sbjct: 157 RRVAVEAGAVGAVVESAPELEGAPAERALAALELMCTVPEGAEEVRAHALAVPVMVTVMG 216

Query: 272 EMEGRGKEYAISALSVVYGGGVLDEQVHQAPPEEVARAVILALQGDCTARARRKGAQLLK 331
           +   RGKEYAI  L+V+YGG + D Q   APPEEVARAV LALQGDC+AR +RKGAQLLK
Sbjct: 217 KTGARGKEYAIGVLAVIYGGDMGDMQT--APPEEVARAVELALQGDCSARGKRKGAQLLK 274

Query: 332 ALQEF 336
            LQ  
Sbjct: 275 TLQHL 279


>IMGA|AC225517_29.1 U-box domain-containing protein 26, related
           AC225517.6 123098-124138 E EGN_Mt090430 20090702
          Length = 288

 Score =  177 bits (448), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 124/245 (50%), Positives = 146/245 (59%), Gaps = 19/245 (7%)

Query: 93  FTQWRFPLVNSPLHQHSPAETITQPKTDSPRALVPLPPPIHSDELQELFREAELQLSTGS 152
           FTQWRF  + +P    +       P      + +P         LQELF  +ELQ    S
Sbjct: 53  FTQWRFS-IPTPTSTPNTPPLPPPPPLPPFLSTIP--------NLQELFHVSELQ----S 99

Query: 153 ESEKLAALHLLERSLVPNPPSDPVCPLE-LMRGVVVNLKNKAGAKAATKILLALCLAEGN 211
            ++  AAL+LLERSLVPNPP D       LMR ++ NL+    +K ATKIL ALCL+E N
Sbjct: 100 TTDLNAALNLLERSLVPNPPQDQPPCPPNLMRALIRNLRE---SKPATKILFALCLSEAN 156

Query: 212 RHXXXXXXXXXXXXXXXXXXXXPVAERALAALELMCTVEEGAAELRAHALAMPVMVAKMG 271
           R                       AERALAALELMCTV EGA E+RAHALA+PVMV  MG
Sbjct: 157 RRVAVEAGAVGAVVESAPELEGAPAERALAALELMCTVPEGAEEVRAHALAVPVMVTVMG 216

Query: 272 EMEGRGKEYAISALSVVYGGGVLDEQVHQAPPEEVARAVILALQGDCTARARRKGAQLLK 331
           +   RGKEYAI  L+V+YGG + D Q   APPEEVARAV LALQGDC+AR +RKGAQLLK
Sbjct: 217 KTGARGKEYAIGVLAVIYGGDMGDMQT--APPEEVARAVELALQGDCSARGKRKGAQLLK 274

Query: 332 ALQEF 336
            LQ  
Sbjct: 275 TLQHL 279


>IMGA|Medtr4g130110.1 U box; Armadillo-like helical
           chr04_pseudomolecule_IMGAG_V3 31126698-31128288 E
           EGN_Mt090430 20090702
          Length = 410

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 76/170 (44%), Gaps = 14/170 (8%)

Query: 181 LMRGVVVNLKNKAGAKAATKI----LLALCLAEGNRHXXXXXXXXXXXXXXXXXXXXPVA 236
           +  GVV  LKN      A KI    L ALCL +  RH                      A
Sbjct: 235 IYDGVVEILKNPISYPRALKIGIKALFALCLVKQTRHRAVSAGAPVVLIDRLADFEKCDA 294

Query: 237 ERALAALELMCTVEEGAAELRAHALAMPVMVAKMGEMEGRGKEYAISALSVVYGGGVLDE 296
           ERALA +EL+C V  G A    HAL +P++V  + ++  R  EYA  AL        L  
Sbjct: 295 ERALATVELLCRVPAGCASFAGHALTVPMLVKIILKISDRATEYAAGALM------ALCS 348

Query: 297 QVHQAPPEEVA----RAVILALQGDCTARARRKGAQLLKALQEFGRADST 342
           +  +   E VA      ++L +Q DCT RA+RK   LLK L++    DS 
Sbjct: 349 ESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSV 398