Jatropha Genome Database

JcCA0304141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304141.10 - phase: 0 
         (565 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g005730.1 FAD linked oxidase, N-terminal chr05_pseudo...   233   2e-61
IMGA|Medtr5g005720.1 FAD binding domain containing protein, iden...   184   1e-46
IMGA|Medtr7g145950.1 FAD-binding domain-containing protein, puta...   112   5e-25
IMGA|Medtr7g145940.1 FAD linked oxidase, N-terminal chr07_pseudo...    86   5e-17
IMGA|Medtr1g068880.1 Galactonolactone dehydrogenase chr01_pseudo...    54   2e-07
IMGA|Medtr4g110290.1 Galactonolactone dehydrogenase chr04_pseudo...    54   2e-07

>IMGA|Medtr5g005730.1 FAD linked oxidase, N-terminal
           chr05_pseudomolecule_IMGAG_V3 320358-319087 H
           EGN_Mt090430 20090702
          Length = 356

 Score =  233 bits (593), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/350 (37%), Positives = 195/350 (55%), Gaps = 18/350 (5%)

Query: 8   VLIVWGPTPLAIQAMPPPAPVRC--DNTGCTLFNSYGAWNDRKACFVPNVLYPSTEEKLR 65
           + I++G     + + PP  P++C  +NT CT+ NS G + DR  C    V+YP+TE +L 
Sbjct: 14  LFIIYG-----VISTPPADPIQCSSNNTNCTITNSNGVFPDRSICRASEVMYPTTEAELI 68

Query: 66  LAVGYAXXXXXXXXXXXXFSHTIPKLACPAASEHKNSILISTLNYSSSIEIDKANLAVTV 125
             V  A            FSH+IPKLACP      N +LIST N +  +++D   L +TV
Sbjct: 69  SIVALASKNNRKVKVATRFSHSIPKLACP----DDNGLLISTKNLNRVLKVDVKLLRMTV 124

Query: 126 DAGVGLRQLIDKVEEAGLSLVTAPYWEGASVGGVICTXXXXXXXXXXXXAVHDHVIGLSL 185
           ++GV LR++I +     ++L   PYW G ++GG+I T            AVH++V  + +
Sbjct: 125 ESGVTLREIISEAARFEMALPNTPYWWGLTIGGLISTGAHGSTLWGKGSAVHEYVTHIRI 184

Query: 186 IVPAKESEGYAKIIRIEAQDPLLKAAKVSLGMLGVISKVKLSLEQAFKRSITYNFTDDGN 245
           + PA   +GYAK+  +      L AA+VSLG+LGVIS+V L LE  FKRS+TY   +D +
Sbjct: 185 VSPAGCEDGYAKVRNLNESHQDLNAARVSLGVLGVISQVTLQLEPLFKRSLTYLTKNDSD 244

Query: 246 IEDMIINHGKKYEFGDITWYPSRHTAVYRYDSRV-PLNASGDGVFDFLGFQSNSIVVSQT 304
           + D +I  GKK+EF D+TWYPS+   +YR D RV  +N  G+G++D +G +S        
Sbjct: 245 LGDELITFGKKHEFADVTWYPSQQKVLYRIDDRVSSVNTFGNGLYDSIGLRSTPSSTLTL 304

Query: 305 TRATEKSLEKANNVNGKC----LLAATFVGFKKLVANGLKNGLLFTGYPV 350
           +R TE+  E  ++ NGKC    L   T  G    ++N   NG+ F  + +
Sbjct: 305 SRTTEELQEATHDTNGKCINGKLTTETLAGIAYGLSN--NNGIFFLTHSI 352


>IMGA|Medtr5g005720.1 FAD binding domain containing protein,
           identical, putative chr05_pseudomolecule_IMGAG_V3
           316873-316145 E EGN_Mt090430 20090702
          Length = 209

 Score =  184 bits (466), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/193 (49%), Positives = 129/193 (66%), Gaps = 4/193 (2%)

Query: 371 IDTSCAWDPRINGLFFYETTAIFPASKFQDFIKDVKKLRDIKPENFCGVDIYNGFLIRYI 430
           + T+C WD RI G F Y+T    P S  + FI+DVKKL  ++P+  CG+D+YNG L+RY+
Sbjct: 1   MSTACIWDSRIKGPFNYDTAFSIPLSIVKYFIEDVKKLVQLEPKALCGLDLYNGILMRYV 60

Query: 431 KASDAYLGQSEDSIVLDFNYYRADDPSTPRLNQDIWEEVEQIAFFKYGAKPHWAKNRNLA 490
             S AYLG++ED++  D  YYR+ DP TPRL +DI EE+EQI  FKYG  PHW KNRN+ 
Sbjct: 61  TTSSAYLGKTEDAVEFDIIYYRSKDPLTPRLYEDIIEEIEQIGLFKYGGLPHWGKNRNIG 120

Query: 491 FLDVQSKYANFGKFLAAKKQLDSQNIFTSEFFDEMLLGQDSGK---DEGCALEGQCICSE 547
           F+    KY    +FL  KK+ D + +F+S++ D++ LG   G     +GCALEG CICS+
Sbjct: 121 FVGAIKKYNKANRFLKVKKKYDPKRLFSSDWTDQV-LGLKEGVTILKDGCALEGLCICSK 179

Query: 548 DRHCSPKKWVFLQ 560
           D HCSPKK  F +
Sbjct: 180 DSHCSPKKNYFCR 192


>IMGA|Medtr7g145950.1 FAD-binding domain-containing protein,
           putative chr07_pseudomolecule_IMGAG_V3 34821979-34822449
           E EGN_Mt090430 20090702
          Length = 156

 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 84/125 (67%), Gaps = 4/125 (3%)

Query: 439 QSEDSIVLDFNYYRADDPSTPRLNQDIWEEVEQIAFFKYGAKPHWAKNRNLAFLDVQSKY 498
           ++++++  D  YYR+ DP TPRL +DI EE+EQI  FKYG  PHW KNRNL F+    KY
Sbjct: 16  ETQNAVDFDITYYRSKDPLTPRLFEDIIEEIEQIGLFKYGGLPHWGKNRNLGFVGAIRKY 75

Query: 499 ANFGKFLAAKKQLDSQNIFTSEFFDEMLLGQDSGK---DEGCALEGQCICSEDRHCSPKK 555
              GKFL  K++ DS+ +F+SE+ +++ LG   G     +GCALEG CICS+D HC+PK 
Sbjct: 76  KKAGKFLKVKEEYDSRGLFSSEWTNQV-LGLKEGVTILKDGCALEGLCICSQDTHCAPKN 134

Query: 556 WVFLQ 560
             F +
Sbjct: 135 SYFCR 139


>IMGA|Medtr7g145940.1 FAD linked oxidase, N-terminal
           chr07_pseudomolecule_IMGAG_V3 34819122-34819580 H
           EGN_Mt090430 20090702
          Length = 152

 Score = 85.9 bits (211), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 77/132 (58%), Gaps = 8/132 (6%)

Query: 8   VLIVWGPTPLAIQAMPPPAPVRC--DNTGCTLFNSYGAWNDRKACFVPNVLYPSTEEKLR 65
           +L+++G     + + PP  P++C  +NT CT+ NS GA+ D+  C    V+YP++E +L 
Sbjct: 19  LLVIYG-----VISTPPEDPIKCSSNNTNCTITNSNGAFPDQSICKASEVVYPTSEVELI 73

Query: 66  LAVGYAXXXXXXXXXXXXFSHTIPKLACPAASEHKNSILISTLNYSSSIEIDKANLAVTV 125
             V  A            FSH+IPKL CP   + +N +L+ST   ++ ++ID   + ++V
Sbjct: 74  SIVALASENNRKMKVATRFSHSIPKLTCP-DDDTQNGLLVSTKFLNNVLKIDVDAMTISV 132

Query: 126 DAGVGLRQLIDK 137
           ++GV LRQ+I +
Sbjct: 133 ESGVTLRQIISE 144


>IMGA|Medtr1g068880.1 Galactonolactone dehydrogenase
           chr01_pseudomolecule_IMGAG_V3 13907781-13914102 E
           EGN_Mt090430 20090702
          Length = 506

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 11/145 (7%)

Query: 112 SSIEIDKANLAVTVDAGVGLRQLIDKVEEAGLSLVTAPYWEGASVGGVICTXXXXXXXXX 171
           S +E+DK    V V AG+ ++QL+D ++E GL+L          +GG+I           
Sbjct: 169 SILEVDKEKKIVRVQAGIRVQQLVDGIKEHGLTLQNFASIREQQIGGII--QVGAHGTGA 226

Query: 172 XXXAVHDHVIGLSLIVPAKESEGYAKIIRIEAQDP-LLKAAKVSLGMLGVISKVKLSLEQ 230
               + + VI + L+ PAK +   +K      +DP L   A+  LG LGV+++V L   Q
Sbjct: 227 RLPPIDEQVIAMKLVTPAKGTIEVSK-----EKDPELFYLARCGLGGLGVVAEVTL---Q 278

Query: 231 AFKRSITYNFTDDGNIEDMIINHGK 255
              R      T    ++++  NH K
Sbjct: 279 CVDRQELVEHTFVSTMDEIKKNHKK 303


>IMGA|Medtr4g110290.1 Galactonolactone dehydrogenase
           chr04_pseudomolecule_IMGAG_V3 24948063-24939281 E
           EGN_Mt090430 20090702
          Length = 506

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 11/145 (7%)

Query: 112 SSIEIDKANLAVTVDAGVGLRQLIDKVEEAGLSLVTAPYWEGASVGGVICTXXXXXXXXX 171
           S +E+DK    V V AG+ ++QL+D ++E GL+L          +GG+I           
Sbjct: 169 SILEVDKEKKIVRVQAGIRVQQLVDGIKEHGLTLQNFASIREQQIGGII--QVGAHGTGA 226

Query: 172 XXXAVHDHVIGLSLIVPAKESEGYAKIIRIEAQDP-LLKAAKVSLGMLGVISKVKLSLEQ 230
               + + VI + L+ PAK +   +K      +DP L   A+  LG LGV+++V L   Q
Sbjct: 227 RLPPIDEQVIAMKLVTPAKGTIEVSK-----EKDPELFYLARCGLGGLGVVAEVTL---Q 278

Query: 231 AFKRSITYNFTDDGNIEDMIINHGK 255
              R      T    ++++  NH K
Sbjct: 279 CVDRQELVEHTFVSTMDEIKKNHKK 303