Jatropha Genome Database

JcCA0304111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304111.10 - phase: 0 
         (323 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g099610.1 Cyclin-like; ; ; chr01_pseudomolecule_IMGAG...   441   e-124
IMGA|Medtr7g062090.1 Cyclin, N-terminal; chr07_pseudomolecule_IM...    67   9e-12

>IMGA|Medtr1g099610.1 Cyclin-like; ; ; chr01_pseudomolecule_IMGAG_V3
           20418778-20422282 E EGN_Mt090430 20090702
          Length = 342

 Score =  441 bits (1133), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/314 (66%), Positives = 251/314 (79%), Gaps = 23/314 (7%)

Query: 1   MADFQTSTHRAKWIFTPQQLVEKHKATNQRAKQMLEKYGTTRMEVDVDGSLSYPEPQVNT 60
           MADFQTSTHR+KWIF+PQ+L+EK+KA N+RAKQ L+  G T MEVDVDGSL+YP+P  N 
Sbjct: 1   MADFQTSTHRSKWIFSPQKLIEKYKAANKRAKQTLDTCGATLMEVDVDGSLTYPQPHPNA 60

Query: 61  AENAYKHSRPKPLSVEEEQFMRVYYEYKLRE------------ATALIYFKRFYLQWSVM 108
            +N  KHSR KPLS+EEEQ ++V+YE KL+E            ATALI+FKRFYLQWSVM
Sbjct: 61  NDNGEKHSRIKPLSIEEEQSIKVFYENKLQEVCNNFHFPHKIQATALIFFKRFYLQWSVM 120

Query: 109 EHDPKNIMLTCIYSACKIEENHVSAEELGKGISQDHHMILNYEMIILQ-----------S 157
           EH PKNIMLTCIY+ACKIEENHVSAEELGKGISQDH MILN EMI+ Q           S
Sbjct: 121 EHQPKNIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNEMIVYQARKGLKYQFVLS 180

Query: 158 LEFDLIVYAPYRSVEGFINDMEEFCHATDDQIQMLKELQSSAVAEVDKIMFTDAPLLFPP 217
           L+FDLIVYAPYRSVEGF + MEE C + +D++Q  K LQ++A  EVDK+M TD+PLLFPP
Sbjct: 181 LDFDLIVYAPYRSVEGFTDSMEELCISGEDELQKFKALQNTARLEVDKMMLTDSPLLFPP 240

Query: 218 GQLALAALRSANEMHQVLDFERYLGDILARQNSIHTMSDLFESLDAINSWVKKYKFPTEK 277
           GQLALAALR++N +H V+DF+ +L  I + QNS HTM++L ESLDAI+SWV+KYK P+EK
Sbjct: 241 GQLALAALRTSNALHTVVDFDSFLSRIFSHQNSTHTMTELLESLDAIDSWVRKYKSPSEK 300

Query: 278 DMKHINRKLKSCWG 291
           ++KHINRKLKSCWG
Sbjct: 301 ELKHINRKLKSCWG 314


>IMGA|Medtr7g062090.1 Cyclin, N-terminal;
           chr07_pseudomolecule_IMGAG_V3 12626574-12636091 E
           EGN_Mt090430 20090702
          Length = 249

 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 19/151 (12%)

Query: 92  ATALIYFKRFYLQWSVMEHDPKNIMLTCIYSACKIEENHVSAEEL----GKGISQDHHM- 146
           ATA+ Y +R Y + S+ E+DP+ +   C+Y A K EE+ V A  L     K  + D +  
Sbjct: 63  ATAVTYMRRVYTRMSMTEYDPRLVAPACLYLASKAEESTVQARLLVFYIKKLYADDKYRY 122

Query: 147 ----ILNYEMIILQSLEFDLIVYAPYRSVEGFINDMEEFCHATDDQIQMLKELQSSAVAE 202
               IL  EM IL++L++ L+V+ PYRS+ GF+ D      A  + + M  +L    V +
Sbjct: 123 EIKDILEMEMKILEALKYYLVVFHPYRSLSGFLQD------AGLNDLSM-TQLTWGLVND 175

Query: 203 VDKIMFTDAPLLFPPGQLALAALRSANEMHQ 233
             K+   D  L+ PP  +ALA +  A+ + +
Sbjct: 176 TYKM---DLMLVHPPHLIALACIYIASVLRE 203