Jatropha Genome Database

JcCA0303171.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0303171.30 + phase: 2 /TE/partial
         (731 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g074430.1 integrase, related chr08_pseudomolecule_IMG...    87   3e-17
IMGA|AC146568_11.1 integrase, related AC146568.11 50809-50552 H ...    62   1e-09
IMGA|Medtr4g036220.1 hypothetical protein chr04_pseudomolecule_I...    49   7e-06

>IMGA|Medtr8g074430.1 integrase, related
           chr08_pseudomolecule_IMGAG_V3 14788217-14787399 H
           EGN_Mt090430 20090702
          Length = 272

 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 77/136 (56%)

Query: 46  NGPHILMKTVEKRRVPKTEEEYNDTDWNDISINAKAVNIIHHALDIVKYNKVSRCEGTIK 105
           +GP      V     PK++ E+ D D   +  +++A ++I  AL   +++ V  CE   +
Sbjct: 50  HGPFFPTHIVNGFTKPKSKTEWTDDDKKKVHPDSRAKHLISCALCNDEFSNVMYCETARE 109

Query: 106 VWDKLKVTYEGTDRVKESRINILQREYEMFSMKESESIAELNSRFINIVNPLRTLAMKIF 165
           +W+ L+  +EGT  VK +RI  L  EYE F MK  E+I ++  RF ++VN L +L  KI 
Sbjct: 110 MWNTLQNIHEGTGEVKMARIGYLTGEYERFCMKPGENIHDMQMRFYDVVNHLASLGKKIP 169

Query: 166 KDELVKESLRILPKKW 181
            ++LV + LR L KKW
Sbjct: 170 NEDLVSKVLRCLSKKW 185


>IMGA|AC146568_11.1 integrase, related AC146568.11 50809-50552 H
           EGN_Mt090430 20090702
          Length = 85

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 46/76 (60%)

Query: 106 VWDKLKVTYEGTDRVKESRINILQREYEMFSMKESESIAELNSRFINIVNPLRTLAMKIF 165
           +WD L+  +EG + VK+S IN L ++YE+F M+E  SI+ +  RF +IVN L+ L   I 
Sbjct: 1   MWDALETLHEGMNNVKQSMINTLVQQYELFRMEEGGSISSVQMRFTHIVNKLQILGNDIP 60

Query: 166 KDELVKESLRILPKKW 181
             +   + LR + + W
Sbjct: 61  NQDFTYKILRCMTRDW 76


>IMGA|Medtr4g036220.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 8827941-8828482 H
           EGN_Mt090430 20090702
          Length = 154

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 8/82 (9%)

Query: 106 VWDKLKVTYEGTDRVKESRINILQREYEMFSMKESESIAELNSRFINI------VNPLRT 159
           +W  LK+ +EGT+ +K+S+IN L  +YE+F M+E E+ + +  RF NI         LRT
Sbjct: 1   MWVTLKICHEGTEDIKQSKINTLTHQYELFDMEEDENTS-MQIRFTNIGMTTRASKNLRT 59

Query: 160 LAMKI-FKDELVKESLRILPKK 180
           L + + F+   +K+S  I  KK
Sbjct: 60  LDITVLFRIRGLKDSDEIFKKK 81