Jatropha Genome Database

JcCA0303171.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0303171.20 - phase: 0 /partial
         (286 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g068880.1 Galactonolactone dehydrogenase chr01_pseudo...   499   e-142
IMGA|Medtr4g110290.1 Galactonolactone dehydrogenase chr04_pseudo...   499   e-142

>IMGA|Medtr1g068880.1 Galactonolactone dehydrogenase
           chr01_pseudomolecule_IMGAG_V3 13907781-13914102 E
           EGN_Mt090430 20090702
          Length = 506

 Score =  499 bits (1284), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 232/286 (81%), Positives = 258/286 (90%)

Query: 1   VGAHGTGARLPPIDEQVISMKLVTPAKGTIEISKEKDPELFYLARCGLGGLGVVAEVTLQ 60
           VGAHGTGARLPPIDEQVI+MKLVTPAKGTIE+SKEKDPELFYLARCGLGGLGVVAEVTLQ
Sbjct: 219 VGAHGTGARLPPIDEQVIAMKLVTPAKGTIEVSKEKDPELFYLARCGLGGLGVVAEVTLQ 278

Query: 61  CVERQELVEHTYISNMKDIKKNHKKLLSENKHVKYLYIPYTDSVVIVTCNPISKWKGPPK 120
           CV+RQELVEHT++S M +IKKNHKKLLSENKHVKYLYIPYT+S V+V CNP+SKWKGPPK
Sbjct: 279 CVDRQELVEHTFVSTMDEIKKNHKKLLSENKHVKYLYIPYTESAVVVRCNPVSKWKGPPK 338

Query: 121 FKPKYSKDEAIEHVRDLYKESLKKYRTGEIAAKAVDKDETNINELSFTELRDKLLALDPL 180
           FKPKY+KDEAI+HVRDLY+ES++KYR      K+ D DE NI+ELSFTELRD+L+ALDPL
Sbjct: 339 FKPKYTKDEAIQHVRDLYRESIQKYRVEGSRNKSSDDDEQNIDELSFTELRDRLIALDPL 398

Query: 181 NKDHVIKVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTLSKPSMKDLE 240
           NK+H++KVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSETCFPAG L+ PSMKDLE
Sbjct: 399 NKNHIVKVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGKLATPSMKDLE 458

Query: 241 YIEELKQLIDKEDIPAPAPIEQRWTACXXXXXXXXXXXXKDDIFSW 286
           YIEELK+LI+KE+IPAPAPIEQRWTA             +DDIFSW
Sbjct: 459 YIEELKKLIEKEEIPAPAPIEQRWTASTRSPMSPASSPSQDDIFSW 504


>IMGA|Medtr4g110290.1 Galactonolactone dehydrogenase
           chr04_pseudomolecule_IMGAG_V3 24948063-24939281 E
           EGN_Mt090430 20090702
          Length = 506

 Score =  499 bits (1284), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 232/286 (81%), Positives = 258/286 (90%)

Query: 1   VGAHGTGARLPPIDEQVISMKLVTPAKGTIEISKEKDPELFYLARCGLGGLGVVAEVTLQ 60
           VGAHGTGARLPPIDEQVI+MKLVTPAKGTIE+SKEKDPELFYLARCGLGGLGVVAEVTLQ
Sbjct: 219 VGAHGTGARLPPIDEQVIAMKLVTPAKGTIEVSKEKDPELFYLARCGLGGLGVVAEVTLQ 278

Query: 61  CVERQELVEHTYISNMKDIKKNHKKLLSENKHVKYLYIPYTDSVVIVTCNPISKWKGPPK 120
           CV+RQELVEHT++S M +IKKNHKKLLSENKHVKYLYIPYT+S V+V CNP+SKWKGPPK
Sbjct: 279 CVDRQELVEHTFVSTMDEIKKNHKKLLSENKHVKYLYIPYTESAVVVRCNPVSKWKGPPK 338

Query: 121 FKPKYSKDEAIEHVRDLYKESLKKYRTGEIAAKAVDKDETNINELSFTELRDKLLALDPL 180
           FKPKY+KDEAI+HVRDLY+ES++KYR      K+ D DE NI+ELSFTELRD+L+ALDPL
Sbjct: 339 FKPKYTKDEAIQHVRDLYRESIQKYRVEGSRNKSSDDDEQNIDELSFTELRDRLIALDPL 398

Query: 181 NKDHVIKVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTLSKPSMKDLE 240
           NK+H++KVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSETCFPAG L+ PSMKDLE
Sbjct: 399 NKNHIVKVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGKLATPSMKDLE 458

Query: 241 YIEELKQLIDKEDIPAPAPIEQRWTACXXXXXXXXXXXXKDDIFSW 286
           YIEELK+LI+KE+IPAPAPIEQRWTA             +DDIFSW
Sbjct: 459 YIEELKKLIEKEEIPAPAPIEQRWTASTRSPMSPASSPSQDDIFSW 504