Jatropha Genome Database

JcCA0303171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0303171.10 - phase: 2 /TE/partial
         (248 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g040700.1 hypothetical protein chr07_pseudomolecule_I...    69   2e-12
IMGA|Medtr5g048410.1 hypothetical protein chr05_pseudomolecule_I...    64   7e-11

>IMGA|Medtr7g040700.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 10057424-10057978 H
           EGN_Mt090430 20090702
          Length = 184

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 67/132 (50%)

Query: 78  RRIGEITFFDSNLPLEGRNHFKPLYIQVAVNGHETRNVMVDNGSALCVCPLKMLSKFKIE 137
           RR+GE            ++H K L+IQ  V+      V+VD G  + + P   L K    
Sbjct: 53  RRVGEQKAMFEKPNSSMKSHLKLLFIQAKVDDIGFNKVLVDRGVGVNLMPQSFLKKIGKF 112

Query: 138 ESKLEPSNMVVKAYDNTMRNAKGTFRAKISMGTIESWIDVVVLDILANYTLLLGRPWLHP 197
           ++ L P N+ +  Y+   R++ G  +  +++ T+       V+   AN+ LLLG+ W+H 
Sbjct: 113 DTDLNPHNIALLNYEGKARHSLGALQVNLTVVTVTMPTLFKVVPSKANFNLLLGKEWIHG 172

Query: 198 LGAIPSTLHRKV 209
           +G  PS++H+++
Sbjct: 173 IGGFPSSMHQRI 184


>IMGA|Medtr5g048410.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 20435366-20437381 H
           EGN_Mt090430 20090702
          Length = 468

 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 97  HFKPLYIQVAVNGHETRNVMVDNGSALCVCPLKMLSKFKIEESKLEPSNMVVKAYDNTMR 156
           H KPL+IQ  V+      V VD  + + +    +L +    ++ L+  N+V+  Y+    
Sbjct: 339 HLKPLFIQAKVDDVRVNKVFVDGSATVNLMSQSLLKRIGKCDADLKHHNIVLSNYEGKTG 398

Query: 157 NAKGTFRAKISMGTIESWIDVVVLDILANYTLLLGRPWLHPLGAIPSTLHRKVKVPWGTD 216
            + G  +  +++G +      +V+   AN+ LLLGR  +H +G IPS++H+KV + W  D
Sbjct: 399 FSLGALQVSLTVGFVTRPTLFIVVPSKANFNLLLGRECIHGIGVIPSSMHQKV-IIWRDD 457