Jatropha Genome Database

JcCA0302931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302931.10 - phase: 0 
         (412 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g090240.1 LETM1-like chr07_pseudomolecule_IMGAG_V3 20...   498   e-141
IMGA|Medtr4g137140.1 LETM1-like chr04_pseudomolecule_IMGAG_V3 33...   424   e-119

>IMGA|Medtr7g090240.1 LETM1-like chr07_pseudomolecule_IMGAG_V3
           20081490-20075571 H EGN_Mt090430 20090702
          Length = 794

 Score =  498 bits (1283), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/425 (63%), Positives = 305/425 (71%), Gaps = 13/425 (3%)

Query: 1   MASRAILRRKRFLLSS--LNQPTCWIRSFSSSEHGEPTQSGGLEG-SRWVVS------HP 51
           MASR ILR+KR LL +  ++Q T  I  FSS   G+P +S  L+G SR+  S      H 
Sbjct: 1   MASRVILRKKRNLLFNHFISQHTSVILGFSSVGIGQPFESSELDGLSRFPFSSSATTGHG 60

Query: 52  SANCDHRYEGGFSLVVRD--ETLLEASFLGHSSLGFSTLGHRTGRRDFDSSSGIRWFSNS 109
             + +H  E     V  D  E    + F  H+  G    G+RT + +  S S + W   S
Sbjct: 61  HDSHEHGRERNMYTVNNDDLEDCSASRFYLHNYFGGLNFGNRTEKIELVSLSRLGWTFQS 120

Query: 110 VRFSSTATAGQPEFGS--GKDRNEQQAAKQVKEASPEECDEAVEDLTEVXXXXXXXQVQE 167
           VR  STA+A Q   GS  G + NE+   KQ KEASPEECDEAVEDL+ +       Q+QE
Sbjct: 121 VRNISTASANQSSLGSNSGGNGNEKSDTKQKKEASPEECDEAVEDLSTIKAKAKAKQLQE 180

Query: 168 LQKSSKSILQRIWAMLLGIGPALRAVASMSREDWAKKLRHWKDEFKSTMQHYWLGTKLLW 227
             KS++SI+++ WAM+LGIGPA RA+  MSR DWAKKL HWKDEFKST+QHYW GTKLLW
Sbjct: 181 PHKSTESIVKKFWAMILGIGPAFRAILLMSRNDWAKKLSHWKDEFKSTLQHYWFGTKLLW 240

Query: 228 ADVRISSRLLVKLASGKGLSRRERQQLTRTTADIFRLVPFAVFIIVXXXXXXXXXXXXXX 287
           ADVRISSRLL+KLA+GK LSRRERQQLTRTT DIFRLVPFAVFIIV              
Sbjct: 241 ADVRISSRLLLKLANGKSLSRRERQQLTRTTIDIFRLVPFAVFIIVPFMEILLPVFLKLF 300

Query: 288 XXXXXSTFQDKMKEQEALKRKLNARIEYAKFLQDTVKEMAKEIQNSRSGEAKKTAEDLDG 347
                STFQDKMKEQEALKR+LNARIEYAKFLQDTVKEMAKE+QNSRSGE KKTAEDLD 
Sbjct: 301 PNMLPSTFQDKMKEQEALKRRLNARIEYAKFLQDTVKEMAKEVQNSRSGEMKKTAEDLDE 360

Query: 348 FMSKVRKGARVSNEEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPYGTDAYLRYMLR 407
           FM+KVR GARVSN+EILGFAKLFNDE TLDNISRPRLVNMCKYMGISPYGTD YLRYMLR
Sbjct: 361 FMNKVRTGARVSNDEILGFAKLFNDEFTLDNISRPRLVNMCKYMGISPYGTDTYLRYMLR 420

Query: 408 RRLQE 412
           +RLQE
Sbjct: 421 KRLQE 425


>IMGA|Medtr4g137140.1 LETM1-like chr04_pseudomolecule_IMGAG_V3
           33697938-33693878 E EGN_Mt090430 20090702
          Length = 539

 Score =  424 bits (1089), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/315 (67%), Positives = 245/315 (77%), Gaps = 8/315 (2%)

Query: 97  FDSSSGIRWFSNSVRFSSTATAGQPEFGSGKDRNEQQAAKQVKEASPEECDEAVEDLTEV 156
           F+ S G+R+ S S    S A A + E     D       K+ KEASPEECD+AVE LTE 
Sbjct: 72  FNESIGVRFLSQS----SEAAARKKEEPPEND----DVVKKRKEASPEECDQAVEGLTEA 123

Query: 157 XXXXXXXQVQELQKSSKSILQRIWAMLLGIGPALRAVASMSREDWAKKLRHWKDEFKSTM 216
                  + QE QK ++S++QR+ A++LGIGPALRAVASMSR DWA KL HWKDEF ST+
Sbjct: 124 KAKAKAKRSQEAQKDAQSVVQRVRAVILGIGPALRAVASMSRADWANKLVHWKDEFISTL 183

Query: 217 QHYWLGTKLLWADVRISSRLLVKLASGKGLSRRERQQLTRTTADIFRLVPFAVFIIVXXX 276
           +HYWLG KLLWADVRISSRLL+KLA+GK LSRRERQQLTRTTADIFRLVP AVFIIV   
Sbjct: 184 KHYWLGCKLLWADVRISSRLLLKLANGKSLSRRERQQLTRTTADIFRLVPVAVFIIVPFM 243

Query: 277 XXXXXXXXXXXXXXXXSTFQDKMKEQEALKRKLNARIEYAKFLQDTVKEMAKEIQNSRSG 336
                           STFQDKMKEQEALKRKL AR+EYA+FLQDTVKEMAKE+QNS SG
Sbjct: 244 EFLLPVFLKVFPNMLPSTFQDKMKEQEALKRKLKARMEYARFLQDTVKEMAKEVQNSGSG 303

Query: 337 EAKKTAEDLDGFMSKVRKGARVSNEEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPY 396
           E KKTAEDLD F++ +RKG+ +SNEEILGFAKLFNDELTLDNI+RPRLVNMCKYMGI+P+
Sbjct: 304 EKKKTAEDLDDFINMIRKGSSISNEEILGFAKLFNDELTLDNINRPRLVNMCKYMGINPF 363

Query: 397 GTDAYLRYMLRRRLQ 411
           GTDAYLRYMLR+RL+
Sbjct: 364 GTDAYLRYMLRKRLR 378