Jatropha Genome Database

JcCA0302271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302271.10 + phase: 0 
         (63 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g106700.1 Cytochrome c oxidase subunit Vc chr01_pseud...    90   3e-19
IMGA|Medtr7g132990.1 Cytochrome c oxidase subunit Vc chr07_pseud...    85   7e-18

>IMGA|Medtr1g106700.1 Cytochrome c oxidase subunit Vc
          chr01_pseudomolecule_IMGAG_V3 22329895-22331551 E
          EGN_Mt090430 20090702
          Length = 64

 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 46/63 (73%)

Query: 1  MAGGKIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVV 60
          M+G +IAHATLKGPSVVKE              WKMHHWNEQRK R FYDLLEKGEISVV
Sbjct: 1  MSGPRIAHATLKGPSVVKEIIIGITLGLVAGGVWKMHHWNEQRKTRTFYDLLEKGEISVV 60

Query: 61 VDE 63
          VDE
Sbjct: 61 VDE 63


>IMGA|Medtr7g132990.1 Cytochrome c oxidase subunit Vc
          chr07_pseudomolecule_IMGAG_V3 30966884-30964293 F
          EGN_Mt090430 20090702
          Length = 64

 Score = 85.1 bits (209), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 45/63 (71%)

Query: 1  MAGGKIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVV 60
          MAG +IAHATLKGPSVVKE              WKMHHWNEQRK R F+DLLEKGEISV+
Sbjct: 1  MAGPRIAHATLKGPSVVKEICIGIVLGLAAGSVWKMHHWNEQRKTRTFHDLLEKGEISVI 60

Query: 61 VDE 63
           +E
Sbjct: 61 AEE 63