Jatropha Genome Database

JcCA0302221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302221.20 - phase: 0 /partial
         (169 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g146810.1 Alpha-isopropylmalate/homocitrate synthase;...   219   7e-58

>IMGA|Medtr1g146810.1 Alpha-isopropylmalate/homocitrate synthase;
           chr01_pseudomolecule_IMGAG_V3 32578362-32586181 F
           EGN_Mt090430 20090702
          Length = 598

 Score =  219 bits (557), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 110/150 (73%), Positives = 126/150 (84%), Gaps = 2/150 (1%)

Query: 3   QRVTDADLLALVSDEVFQPEIVWQLGDLQITCGTLGLSTATVKLIDANGEQHIACSVGTG 62
           +R+TDADL ALVSDEVFQ E +W+L DLQ+TCGTLGLSTATVKL+  +G  HIACSVGTG
Sbjct: 449 KRITDADLRALVSDEVFQAEPIWKLDDLQVTCGTLGLSTATVKLVGDDGSTHIACSVGTG 508

Query: 63  PVDAAYKAVDLIVKEPVELLEYSMTAVTGGIDAIATTRVLICGDNHK--IDAITGEPSRR 120
           PVD+AYKAVDLIVKEP  LLEYSM AVT GIDAIATTRV+I GD  +    A+TGE  +R
Sbjct: 509 PVDSAYKAVDLIVKEPATLLEYSMIAVTEGIDAIATTRVVIRGDTDQTSTHALTGESVQR 568

Query: 121 TFSGSGAGMDIVVSSVKAYIGALNKMLAVN 150
           TFSG+GAGMD+VVSSVKAYI A+NKML+  
Sbjct: 569 TFSGTGAGMDVVVSSVKAYIAAINKMLSFK 598