Jatropha Genome Database

JcCA0302101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302101.20 + phase: 0 /partial
         (246 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g095550.1 Zinc finger, UBP-type chr02_pseudomolecule_...   412   e-115
IMGA|Medtr2g095550.2 Zinc finger, UBP-type chr02_pseudomolecule_...   372   e-103

>IMGA|Medtr2g095550.1 Zinc finger, UBP-type
           chr02_pseudomolecule_IMGAG_V3 21850249-21848354 E
           EGN_Mt090430 20090702
          Length = 254

 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 186/245 (75%), Positives = 220/245 (89%)

Query: 1   MELLRSNLSRVRIPEPTNRIYKDECCISFDTPRSEGGLYVDMNTFLAFGKDSVGWNYEKT 60
           M+LLRSNLSRVRIPEPTNR+YK ECC+SFDTP SEGGL++DM  FLAFGKD VGWN+EKT
Sbjct: 1   MDLLRSNLSRVRIPEPTNRVYKQECCLSFDTPMSEGGLFIDMFNFLAFGKDYVGWNFEKT 60

Query: 61  GDAVYLHIKQTRKLVPEDRPSKKPTLLAIGVEGGFDNNEPEYEEIYSIVILPDYVTFPFP 120
           G+ VYLH+K+T+K VPEDRP KKPTLLAIG++GGFDNNE +YEE ++IVILPDYV+  +P
Sbjct: 61  GNPVYLHVKKTKKPVPEDRPLKKPTLLAIGIDGGFDNNEADYEETHNIVILPDYVSLSYP 120

Query: 121 SVDLPEKVRLAVDAILMAESAERKEQLAAWTADKKQISAYAMNLPQIDNGVIVPPSGWKC 180
           SV+LPEKVRLA DAIL+   AERKEQ+AAWTADKK +S YA NL QIDNGV++PP+GWKC
Sbjct: 121 SVELPEKVRLAADAILLDAGAERKEQVAAWTADKKLVSVYATNLQQIDNGVVIPPTGWKC 180

Query: 181 AKCEKRENLWLNLSDGTILCGRRNWDGSGGNNHAIEHYKETSYPLAVKLGTITADLEAAG 240
           ++C+K +NLWLNL+DG ILCGR+NWDGSGGNNHA+EHYK+T YPLAVKLGTITADLEAAG
Sbjct: 181 SQCDKTDNLWLNLTDGVILCGRKNWDGSGGNNHAVEHYKKTGYPLAVKLGTITADLEAAG 240

Query: 241 NVTLS 245
           +  L+
Sbjct: 241 DALLA 245


>IMGA|Medtr2g095550.2 Zinc finger, UBP-type
           chr02_pseudomolecule_IMGAG_V3 21850249-21848354 E
           EGN_Mt090430 20090702
          Length = 236

 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 173/245 (70%), Positives = 205/245 (83%), Gaps = 18/245 (7%)

Query: 1   MELLRSNLSRVRIPEPTNRIYKDECCISFDTPRSEGGLYVDMNTFLAFGKDSVGWNYEKT 60
           M+LLRSNLSRVRIPEPTNR+YK ECC+SFDTP                  D VGWN+EKT
Sbjct: 1   MDLLRSNLSRVRIPEPTNRVYKQECCLSFDTP------------------DYVGWNFEKT 42

Query: 61  GDAVYLHIKQTRKLVPEDRPSKKPTLLAIGVEGGFDNNEPEYEEIYSIVILPDYVTFPFP 120
           G+ VYLH+K+T+K VPEDRP KKPTLLAIG++GGFDNNE +YEE ++IVILPDYV+  +P
Sbjct: 43  GNPVYLHVKKTKKPVPEDRPLKKPTLLAIGIDGGFDNNEADYEETHNIVILPDYVSLSYP 102

Query: 121 SVDLPEKVRLAVDAILMAESAERKEQLAAWTADKKQISAYAMNLPQIDNGVIVPPSGWKC 180
           SV+LPEKVRLA DAIL+   AERKEQ+AAWTADKK +S YA NL QIDNGV++PP+GWKC
Sbjct: 103 SVELPEKVRLAADAILLDAGAERKEQVAAWTADKKLVSVYATNLQQIDNGVVIPPTGWKC 162

Query: 181 AKCEKRENLWLNLSDGTILCGRRNWDGSGGNNHAIEHYKETSYPLAVKLGTITADLEAAG 240
           ++C+K +NLWLNL+DG ILCGR+NWDGSGGNNHA+EHYK+T YPLAVKLGTITADLEAAG
Sbjct: 163 SQCDKTDNLWLNLTDGVILCGRKNWDGSGGNNHAVEHYKKTGYPLAVKLGTITADLEAAG 222

Query: 241 NVTLS 245
           +  L+
Sbjct: 223 DALLA 227