Jatropha Genome Database

JcCA0302081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302081.10 + phase: 1 /partial
         (54 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g100760.1 Ribosomal protein S10, eukaryotic and archa...   108   6e-25
IMGA|Medtr2g100300.1 Ribosomal protein S10, eukaryotic and archa...   108   6e-25
IMGA|Medtr2g100170.1 Ribosomal protein S10, eukaryotic and archa...   108   6e-25
IMGA|Medtr7g111380.1 Ribosomal protein S10, eukaryotic and archa...   108   6e-25
IMGA|Medtr4g039080.1 Ribosomal protein S10, eukaryotic and archa...   108   6e-25

>IMGA|Medtr2g100760.1 Ribosomal protein S10, eukaryotic and archaeal
           form chr02_pseudomolecule_IMGAG_V3 23553996-23550892 E
           EGN_Mt090430 20090702
          Length = 123

 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 50/54 (92%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RK+PCGEGTNTWDRFELRVHKRVIDL+SSP+VVKQITSITIEPGVEVEVTIAD+
Sbjct: 70  RKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123


>IMGA|Medtr2g100300.1 Ribosomal protein S10, eukaryotic and archaeal
           form chr02_pseudomolecule_IMGAG_V3 23328972-23332076 E
           EGN_Mt090430 20090702
          Length = 123

 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 50/54 (92%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RK+PCGEGTNTWDRFELRVHKRVIDL+SSP+VVKQITSITIEPGVEVEVTIAD+
Sbjct: 70  RKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123


>IMGA|Medtr2g100170.1 Ribosomal protein S10, eukaryotic and archaeal
           form chr02_pseudomolecule_IMGAG_V3 23299400-23296291 E
           EGN_Mt090430 20090702
          Length = 123

 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 50/54 (92%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RK+PCGEGTNTWDRFELRVHKRVIDL+SSP+VVKQITSITIEPGVEVEVTIAD+
Sbjct: 70  RKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123


>IMGA|Medtr7g111380.1 Ribosomal protein S10, eukaryotic and archaeal
           form chr07_pseudomolecule_IMGAG_V3 26148000-26149875 F
           EGN_Mt090430 20090702
          Length = 122

 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 50/54 (92%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RK+PCGEGTNTWDRFELRVHKRVIDL+SSP+VVKQITSITIEPGVEVEVTIAD+
Sbjct: 69  RKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 122


>IMGA|Medtr4g039080.1 Ribosomal protein S10, eukaryotic and archaeal
           form chr04_pseudomolecule_IMGAG_V3 9398013-9395013 E
           EGN_Mt090430 20090702
          Length = 122

 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 50/54 (92%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RK+PCGEGTNTWDRFELRVHKRVIDL+SSP+VVKQITSITIEPGVEVEVTIAD+
Sbjct: 69  RKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 122