Jatropha Genome Database

JcCA0301151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0301151.10 - phase: 0 
         (423 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g089510.1 Pentatricopeptide repeat chr04_pseudomolecu...    75   5e-14

>IMGA|Medtr4g089510.1 Pentatricopeptide repeat
            chr04_pseudomolecule_IMGAG_V3 18666066-18662138 E
            EGN_Mt090430 20090702
          Length = 1185

 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 31/110 (28%)

Query: 130  IVKEESTDVNEKTNENA---LRLEMEENQQKQEIEGLAEDNITMGNKFFVYPQ-AVKPDQ 185
            +++E S   + + NE A   L+L++EEN  KQEIE +AE+N+  G   F YP   VKPD+
Sbjct: 1097 VIEETSAATDGRINEEASRMLKLKLEENLWKQEIERIAEENLLQGTNMFAYPPPGVKPDR 1156

Query: 186  DIELYLNRSLSTLNNEPDVFIMGAFNDWRWKSFTMKLNKTHLKGDWWSCQ 235
                                       +R KSF+ +LNKTHLK DWWSCQ
Sbjct: 1157 ---------------------------YRSKSFSTRLNKTHLKDDWWSCQ 1179