Jatropha Genome Database

JcCA0300071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0300071.10 - phase: 0 
         (321 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g032130.1 Starch synthase catalytic region chr05_pseu...   119   1e-27
IMGA|Medtr6g012910.1 Glycosyl transferase, group 1 chr06_pseudom...    65   3e-11
IMGA|Medtr3g123800.1 Glycosyl transferase, group 1; N-6 Adenine-...    53   2e-07

>IMGA|Medtr5g032130.1 Starch synthase catalytic region
           chr05_pseudomolecule_IMGAG_V3 12928209-12924338 E
           EGN_Mt090430 20090702
          Length = 430

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 102/190 (53%), Gaps = 4/190 (2%)

Query: 100 NPMNIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQKQQISDLALV 159
           N  +IIH+  EM P+   G +   VTG+ARA   +GH   ++LP Y C+   ++  L  V
Sbjct: 189 NGFHIIHICTEMTPLVSRGSVASYVTGIARALQRKGHLAEVILPKYACLDLDEVQGLREV 248

Query: 160 TT-YNSYHDGNWVPTNAYRGVVSDIPVIFIEP--SNEFFKGQQVYGGSYNELEAYLFFSR 216
                SY +G       + GVV  + V  IEP   + FF  + +YG   ++ E + +F R
Sbjct: 249 NVEVYSYFNGQLHGNRIWTGVVYGVGVTLIEPLDHSSFFSREMIYGYP-DDFERFSYFCR 307

Query: 217 ACLEWMQVTEIQPDIIHVHEWQTGGLPLLYWDMYHYLSLKNPRVVLTIHNMEHYGECRKE 276
           A L+++     QPDI+H+H W+T  +  L+WD++    L   R++LTIHN    G  + +
Sbjct: 308 ASLDYIVKCGKQPDILHLHNWETAIVAPLFWDVFVNKGLGGTRILLTIHNFNSQGTEQPD 367

Query: 277 QLSKSGLDGS 286
           +L+  GLD S
Sbjct: 368 KLALCGLDPS 377


>IMGA|Medtr6g012910.1 Glycosyl transferase, group 1
           chr06_pseudomolecule_IMGAG_V3 2547326-2554167 E
           EGN_Mt090430 20090702
          Length = 758

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 13/181 (7%)

Query: 100 NPMNIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQKQQISDLALV 159
           N MNII V AE AP +K GGLGDV   L +A   RGH V ++ P Y    + Q  D+ + 
Sbjct: 265 NVMNIILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEAQ--DIGVR 322

Query: 160 TTYNSYHDGNWVPTNAYRGVVSDIPVIFIEPSNEFFKGQQVYGGSYNE-LEAYLFFSRAC 218
             Y     G  +    ++  +  +  +FI+          +YGG+  + L     F +A 
Sbjct: 323 KRYKVA--GQDMEVTYFQTYIDGVDFVFIDSPIFQHLESNIYGGNRVDILRRMALFCKAA 380

Query: 219 LE--WM----QVTEIQPDIIHV-HEWQTGGLPLLYWDMYHYLSLKN-PRVVLTIHNMEHY 270
           +E  W      V     +++ + ++W T  LP+     Y    L N  R VL IHN+ H 
Sbjct: 381 VEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDHGLMNYTRSVLVIHNIAHQ 440

Query: 271 G 271
           G
Sbjct: 441 G 441


>IMGA|Medtr3g123800.1 Glycosyl transferase, group 1; N-6
           Adenine-specific DNA methylase
           chr03_pseudomolecule_IMGAG_V3 31238660-31231370 E
           EGN_Mt090430 20090702
          Length = 663

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 93/237 (39%), Gaps = 20/237 (8%)

Query: 103 NIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFY---ECIQKQQISDLALV 159
           NI+ VT+E AP +K GGL DV   L  A   RGH V ++ P Y        +    + L 
Sbjct: 150 NIVFVTSEAAPYSKTGGLADVCGSLPIALAGRGHRVMVISPRYIHGTAADSKFSGAVDLG 209

Query: 160 TTYNSYHDGNWVPTNAYRGVVSDIPVIFIE-PSNEFFKGQQVYGGSY-----NELEAYLF 213
           +  N +  G       +      +  +F++ PS  F +    YG  +     N+    L 
Sbjct: 210 SPINVFCFGGAQEVGFFHEYREGVDWVFVDHPS--FHRPGNPYGDKHGTFKDNQFRFTLL 267

Query: 214 FSRAC-----LEWMQVTEIQPDIIHVHEWQTGGLPLLYWDMYH-YLSLKNPRVVLTIHNM 267
              AC     L     T  +  +  V++W    + +L    Y  Y   K+ R +L IHN+
Sbjct: 268 SHAACEAPLVLPLGGFTYGEKCLFLVNDWHASLVSVLLASKYRPYGVYKDARSILVIHNI 327

Query: 268 EHYGECRKEQLSKSGLDGSIYATVEKAVDDRTIGH---NPERLSLLKGGIVYSNAVV 321
            H G       S  GL    Y  +          H     E ++ LKG IV ++ +V
Sbjct: 328 AHQGVEPAITYSNLGLPQEWYGALGWVFPTWARTHALDTGEAVNFLKGAIVTADRIV 384