Jatropha Genome Database

JcCA0299871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0299871.10 - phase: 0 /partial
         (278 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g071140.1 Nitric oxide synthase, putative chr02_pseud...   411   e-115
IMGA|Medtr2g071140.2 Nitric oxide synthase, putative chr02_pseud...   149   1e-36
IMGA|Medtr7g107700.1 GTP-binding protein, HSR1-related chr07_pse...    70   9e-13
IMGA|Medtr4g101260.1 GTP binding, related chr04_pseudomolecule_I...    66   2e-11

>IMGA|Medtr2g071140.1 Nitric oxide synthase, putative
           chr02_pseudomolecule_IMGAG_V3 16287510-16279895 E
           EGN_Mt090430 20090702
          Length = 547

 Score =  411 bits (1056), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/278 (69%), Positives = 228/278 (82%)

Query: 1   GSANVGKSAFINASLKMMAQRDPXXXXXRKYKPVQSAVPGTTLGPIQIDAFLGGGKIFDT 60
           GSANVGKSAFINA LK M+  DP     ++YKPVQSAVPGTTLGPIQI+AF GGGK++DT
Sbjct: 270 GSANVGKSAFINALLKTMSYNDPVAAAAQRYKPVQSAVPGTTLGPIQINAFFGGGKLYDT 329

Query: 61  PGVHLHHRQAAVVHSEDLPILAPRSRLRGQSFPNAKLASENGVANKFESNGLNGFSIFWG 120
           PGVHLHHRQ AVV SEDL  LAP+SRLRG SFP++++ S+N        NGLNGFSIFWG
Sbjct: 330 PGVHLHHRQTAVVPSEDLSSLAPKSRLRGLSFPSSQVLSDNTNKGASTVNGLNGFSIFWG 389

Query: 121 GLVRIDILKVLPETSLTFYGPKALQIHIVPTDQADEFYLEELGVLLTPPTGKERAEDWKG 180
           GLVRID+LK LPET LTFYGPK + IH+VPT++ADEFY +ELGVLLTPP+G+E+AE W+G
Sbjct: 390 GLVRIDVLKALPETCLTFYGPKRMPIHMVPTEKADEFYQKELGVLLTPPSGREKAEHWRG 449

Query: 181 LEIVRQLQIKFEDAERPASDIAISGLGWIAIEPASKSLRRPDMNLGEIAKELHLAVHVPK 240
           L+  R+LQIKFEDAERPA DIAISGLGW+++EP  +S R    N  +   EL LAVHVPK
Sbjct: 450 LDSERKLQIKFEDAERPACDIAISGLGWLSVEPVGRSHRFSQQNAIDTTGELLLAVHVPK 509

Query: 241 PVEIFVRPPLPVGKYGAEWYQYRELTEKEEELRPRWNF 278
           PVEIF RPPLPVGK GAEWY+Y ELT+KE+E+RP+W F
Sbjct: 510 PVEIFTRPPLPVGKAGAEWYEYAELTDKEQEMRPKWYF 547


>IMGA|Medtr2g071140.2 Nitric oxide synthase, putative
           chr02_pseudomolecule_IMGAG_V3 16287510-16281555 E
           EGN_Mt090430 20090702
          Length = 370

 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 78/93 (83%)

Query: 1   GSANVGKSAFINASLKMMAQRDPXXXXXRKYKPVQSAVPGTTLGPIQIDAFLGGGKIFDT 60
           GSANVGKSAFINA LK M+  DP     ++YKPVQSAVPGTTLGPIQI+AF GGGK++DT
Sbjct: 270 GSANVGKSAFINALLKTMSYNDPVAAAAQRYKPVQSAVPGTTLGPIQINAFFGGGKLYDT 329

Query: 61  PGVHLHHRQAAVVHSEDLPILAPRSRLRGQSFP 93
           PGVHLHHRQ AVV SEDL  LAP+SRLRG SFP
Sbjct: 330 PGVHLHHRQTAVVPSEDLSSLAPKSRLRGLSFP 362


>IMGA|Medtr7g107700.1 GTP-binding protein, HSR1-related
           chr07_pseudomolecule_IMGAG_V3 25232505-25227091 E
           EGN_Mt090430 20090702
          Length = 616

 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 49/216 (22%)

Query: 1   GSANVGKSAFINASLKMMAQRDPXXXXXRKYKPVQSAVPGTTLGPIQIDAFLGG-GKIFD 59
           G+ N GKS  INA  K            +  K  ++ VPGTTLG ++I   L    K+FD
Sbjct: 368 GAQNAGKSTLINAFAK--------KEGAKVTKLTEAPVPGTTLGILRIAGILSAKAKMFD 419

Query: 60  TPGVHLHHRQAAVVHSEDLPILAPRSRLRGQSFPNAKLASENGVANKFESNGLNGFSIFW 119
           TPG+ LH            P L      R                   E   + G +I  
Sbjct: 420 TPGL-LH------------PYLLSMRLNR-------------------EEQKMAGQAIHV 447

Query: 120 GGLVRIDILKVLPETS-LTFYGPKALQIHIVPTDQADEFYLEELGVLLTPPTGKERAED- 177
           GGL R+D+++   +T  +T +    + +H+   + A+E +   +GV L PP G +RA + 
Sbjct: 448 GGLARLDLIEASVQTMYVTVWASPNVSLHMGKIENANEIWNNHVGVRLQPPIGNDRAAEL 507

Query: 178 --WKGLEIVRQLQIKFEDAERPASDIAISGLGWIAI 211
             WK     R++++     +    D++I+GLGW ++
Sbjct: 508 GTWKE----REVKVSGSSWDVNCMDVSIAGLGWFSL 539


>IMGA|Medtr4g101260.1 GTP binding, related
           chr04_pseudomolecule_IMGAG_V3 21947875-21951076 E
           EGN_Mt090430 20090702
          Length = 564

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 28/213 (13%)

Query: 1   GSANVGKSAFINASLKMMAQRDPXXXXXRKYKPVQSAVPGTTLGPIQIDAFL-GGGKIFD 59
           G+ N GKS  IN+  K +  +             ++ VPGTTLG ++++  L    K+FD
Sbjct: 296 GAQNAGKSTLINSIGKHVGGKISHL--------TEAPVPGTTLGIVRVEGALPSQAKLFD 347

Query: 60  TPGVHLHHRQAAVVHSEDLPILAPRSRLRGQSFPNAKLASENGVANKFESNGLNGFSIFW 119
           TPG+   ++    +  E+  ++     L+ +++             + ++    G SI  
Sbjct: 348 TPGLLHPYQITTRLMREEQKLVYMTKELKPRTY-------------RIKA----GHSIHI 390

Query: 120 GGLVRIDILKV-LPETSLTFYGPKALQIHIVPTDQADEFYLEELGVLLTPPTGKERAEDW 178
            GL+R+D+ +  L    +T +    L +H+   + A + + +  G  L PP G+ER ++ 
Sbjct: 391 AGLMRLDVEETSLDTIYVTVWASPYLPLHMGKIENASKMFKDYFGHQLQPPIGEERVKEL 450

Query: 179 KGLEIVRQLQIKFEDAERPASDIAISGLGWIAI 211
            G  + R+  +     +  + DIA +GLGW AI
Sbjct: 451 -GNWVRREFHVCGNSWDSSSVDIAAAGLGWFAI 482