Jatropha Genome Database

JcCA0299231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0299231.10 - phase: 0 /partial
         (565 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC235488_7.1 HMG-I and HMG-Y, DNA-binding AC235488.1 16550-...   738   0.0  
IMGA|AC233100_6.1 STAG AC233100.6 23979-21603 E EGN_Mt090430 200...   406   e-113
IMGA|Medtr3g067520.1 SCC3 ; binding {Arab, putative chr03_pseudo...   262   3e-70
IMGA|AC233100_45.1 Putative sister-chromatide cohesion protein, ...   167   1e-41
IMGA|Medtr5g100230.1 Sister-chromatide cohesion protein, putativ...   119   4e-27
IMGA|Medtr3g067530.1 hypothetical protein chr03_pseudomolecule_I...    64   2e-10

>IMGA|AC235488_7.1 HMG-I and HMG-Y, DNA-binding AC235488.1 16550-28206
            E EGN_Mt090430 20090702
          Length = 1144

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/555 (65%), Positives = 449/555 (80%), Gaps = 7/555 (1%)

Query: 1    DWKCIISILLDENPQVELTDDDATNLVRLLFASVRKAVGERIVPASDNRKQYYNKAQKEI 60
            DWKCIIS+LLDEN  +  TD   TNLVRLL ASV+KAVGE+IVPA DNRKQY++KAQKE+
Sbjct: 478  DWKCIISMLLDENSSI--TDKSKTNLVRLLCASVKKAVGEKIVPAIDNRKQYHSKAQKEV 535

Query: 61   FENNRRDITIAMMKNFPLLLRKFTADKAKVPSLVEIIVHMNLELYSLKRQEQNFKNVLQL 120
            FENN++DIT+AMM+ +P LLRKF +DKAKV  LVEI+++MNLE YSLKRQEQNFKN+LQL
Sbjct: 536  FENNKQDITVAMMEKYPELLRKFISDKAKVSLLVEIVMYMNLEFYSLKRQEQNFKNLLQL 595

Query: 121  IKEAFFKHGEKEALRSCVKAITFCSTESQGELKDFACNKLKNLEDELIAKLKSALKEA-A 179
            +++AF K G+K+ LR+CVKAI FC  ES+GEL+DFA  KLK LE ++I  LKSA+ E  A
Sbjct: 596  MEDAFLKIGDKDPLRACVKAINFCCVESRGELQDFARIKLKKLEVKIIKNLKSAISEVKA 655

Query: 180  DGDEYSLLVNLKRLYELQLSRAVPIESLYDDIVRILHYFRNVDDEVVSFLLLNMYLHVAW 239
             GDEYSLLVNLKRLYELQLSR VPI++LY+DIV +L   RN++DEVV  LL NM++H+AW
Sbjct: 656  GGDEYSLLVNLKRLYELQLSRYVPIDNLYEDIVMVLRDVRNMEDEVVGLLLQNMHIHLAW 715

Query: 240  SLQSIVNSETVSEAQLSSLLSKRNVLFEELEYFLITPSNEERVSKYANQLACRVCIILAE 299
            SLQS+++ E+VS+A L+SL SKR+ L +ELEY++   ++   V K  ++LA RVC +LAE
Sbjct: 716  SLQSVIDGESVSDASLTSLRSKRDTLLQELEYYVNLATDSNEVDKIGSELAGRVCAVLAE 775

Query: 300  AWCLFRQTNFSSTKLESLGYCPDTSVLQKFWRLSEQQLNISDETEDEDSNK----EYIEE 355
            AWCLFR  NFS T LE LGY P+  VLQKFW L +QQL + DE ED+D NK    EY EE
Sbjct: 776  AWCLFRMANFSKTGLEGLGYQPNAHVLQKFWELCQQQLTVPDEVEDDDVNKDVTTEYSEE 835

Query: 356  TNRDAVVIAAAKLVASGTVSKEYLAPEIISHFVMHGTSIAEIVKHLITVIKKKDDDTTNI 415
            T+R AV+IAA KL++S  V K+YLAPEIISHFVMHG  +AEIVKHLIT +KK +DD   I
Sbjct: 836  TDRCAVLIAACKLISSDVVPKDYLAPEIISHFVMHGARVAEIVKHLITFLKKGEDDLAAI 895

Query: 416  FLEALKRAHHRHLEELSRSDDGSVGKSFQECKDLAARLSATFMGAARNKHRADILKIVKE 475
            FLEALK+A+HRH+ + S +D+ S   SF ECK+LA +LS TF+GAARNK+++DILK+VK+
Sbjct: 896  FLEALKKAYHRHIVDNSGNDNISSENSFSECKNLAVQLSGTFIGAARNKYKSDILKLVKD 955

Query: 476  GIEYAFIDSPKQLSFLEGAVLHFVSKLPTSDVLEILKDVQSRTENVNTDEDPSGWRPYHT 535
            GIEYAF+D+PKQLSFLE AV+HFVSKLP SDVLEI KDV+ RTENVN DE+PSGWRPY T
Sbjct: 956  GIEYAFVDAPKQLSFLEAAVVHFVSKLPASDVLEIKKDVEKRTENVNKDENPSGWRPYCT 1015

Query: 536  FVDNLREKYAKNDGF 550
            FV+ LREK  KN+ F
Sbjct: 1016 FVEVLREKCVKNEVF 1030


>IMGA|AC233100_6.1 STAG AC233100.6 23979-21603 E EGN_Mt090430
           20090702
          Length = 771

 Score =  406 bits (1044), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/318 (64%), Positives = 254/318 (79%), Gaps = 7/318 (2%)

Query: 1   DWKCIISILLDENPQVELTDDDATNLVRLLFASVRKAVGERIVPASDNRKQYYNKAQKEI 60
           DWKCIIS+LLDEN  +  T++  TNLVRLL ASV+KAVGE+IVPA DNRKQYYNK QKE+
Sbjct: 457 DWKCIISMLLDENSLI--TNESKTNLVRLLCASVKKAVGEKIVPAIDNRKQYYNKTQKEV 514

Query: 61  FENNRRDITIAMMKNFPLLLRKFTADKAKVPSLVEIIVHMNLELYSLKRQEQNFKNVLQL 120
           FENN+ DITIAMM++FPLLL+KF +D+AKV  LVEI+++MNLE YSLKRQEQNFKN+LQL
Sbjct: 515 FENNKHDITIAMMESFPLLLQKFISDEAKVSLLVEIVLYMNLEFYSLKRQEQNFKNLLQL 574

Query: 121 IKEAFFKHGEKEALRSCVKAITFCSTESQGELKDFACNKLKNLEDELIAKLKSALKEA-A 179
           +K AFFKHG+K+ LR CVKAI FC  ES+GEL+D A N LK +ED +I KL+SA++E  A
Sbjct: 575 MKNAFFKHGDKDPLRGCVKAINFCCVESRGELQDVARNNLKEVEDLVIDKLESAIREVKA 634

Query: 180 DGDEYSLLVNLKRLYELQLSRAVPIESLYDDIVRILHYFRNVDDEVVSFLLLNMYLHVAW 239
            GDEYSLLVNL+RLYELQLS+ VPI+ LY+DIV +L   RN+ DEVV  LL N+Y  +AW
Sbjct: 635 GGDEYSLLVNLRRLYELQLSKYVPIDKLYEDIVMVLRDVRNMKDEVVGLLLQNLYFDLAW 694

Query: 240 SLQSIVNSETVSEAQLSSLLSKRNVLFEELEYF--LITPSNEERVSKYANQLACRVCIIL 297
           SL+ +++ E+VS+A + +LLSKR+   +EL+YF  L+T SNE    K  ++L  RVC +L
Sbjct: 695 SLKFVIDGESVSDASVKTLLSKRDTFLQELDYFVNLVTDSNEG--DKSGSELDGRVCTML 752

Query: 298 AEAWCLFRQTNFSSTKLE 315
           AE WCLFR TNFS T LE
Sbjct: 753 AETWCLFRMTNFSKTGLE 770


>IMGA|Medtr3g067520.1 SCC3 ; binding {Arab, putative
           chr03_pseudomolecule_IMGAG_V3 15500917-15502798 E
           EGN_Mt090430 20090702
          Length = 339

 Score =  262 bits (670), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 150/271 (55%), Positives = 194/271 (71%), Gaps = 25/271 (9%)

Query: 1   DWKCIISILLDENPQVELTDDDATNLVRLLFASVRKAVGERIVPASDNRKQYYNKAQKEI 60
           DWKCI+ +LLDEN    ++D   TNLVRLL ASV+KA GERI                E+
Sbjct: 70  DWKCILYMLLDEN--FSISDKSVTNLVRLLCASVKKAFGERI----------------EV 111

Query: 61  FENNRRDITIAMMKNFPLLLRKFTADKAKVPSLVEIIVHMNLELYSLKRQEQNFKNVLQL 120
           FENN++DIT+AMMK +PLLLRKF +DK KV     ++      ++ L    Q+ +NVLQL
Sbjct: 112 FENNKQDITVAMMKCYPLLLRKFISDKTKV----SLLAGTGWRIF-LADAFQDLRNVLQL 166

Query: 121 IKEAFFKHGEKEALRSCVKAITFCSTESQGELKDFACNKLKNLEDELIAKLKSALKEAAD 180
           +KEAFFKHG+K+ LR+CVKAI FC  ES+GEL+DFA NKLK LEDE+I KLKSA+KE  D
Sbjct: 167 MKEAFFKHGDKDPLRACVKAINFCCKESRGELQDFARNKLKELEDEIIDKLKSAIKEVED 226

Query: 181 -GDEYSLLVNLKRLYELQLSRAVPIESLYDDIVRILHYFRNVDDEVVSFLLLNMYLHVAW 239
            GDEYS LVNL+RL+ELQLSR V I++L+++IV +L  +RNV+DEVV  LL  ++ H+AW
Sbjct: 227 GGDEYS-LVNLRRLHELQLSRYVSIDNLHEEIVMVLRNYRNVEDEVVGLLLQLLHFHLAW 285

Query: 240 SLQSIVNSETVSEAQLSSLLSKRNVLFEELE 270
           SL SI+   +VS A ++S LSKR+ L  EL+
Sbjct: 286 SLMSIIYGGSVSAASINSFLSKRDTLLSELD 316


>IMGA|AC233100_45.1 Putative sister-chromatide cohesion protein,
           AC233100.6 148124-147110 E EGN_Mt090430 20090702
          Length = 199

 Score =  167 bits (423), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 94/109 (86%)

Query: 442 SFQECKDLAARLSATFMGAARNKHRADILKIVKEGIEYAFIDSPKQLSFLEGAVLHFVSK 501
           SF ECK+LA ++S T++GAARNK+++DILK+V  GIEYAF D+PK LSFLE AV+HFVSK
Sbjct: 6   SFSECKNLAVQISRTYIGAARNKYKSDILKLVNGGIEYAFEDAPKHLSFLEAAVIHFVSK 65

Query: 502 LPTSDVLEILKDVQSRTENVNTDEDPSGWRPYHTFVDNLREKYAKNDGF 550
           LP SDVLEI KDV+ RTENVN DE+PSGWRPY+TFV+ L+EK AKN+ F
Sbjct: 66  LPASDVLEIKKDVEKRTENVNKDENPSGWRPYYTFVEVLQEKGAKNEVF 114


>IMGA|Medtr5g100230.1 Sister-chromatide cohesion protein, putative
           chr05_pseudomolecule_IMGAG_V3 40114210-40115081 E
           EGN_Mt090430 20090702
          Length = 103

 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 74/101 (73%)

Query: 303 LFRQTNFSSTKLESLGYCPDTSVLQKFWRLSEQQLNISDETEDEDSNKEYIEETNRDAVV 362
           +   TN S+T+ E LGY P++ VLQKFW   +QQL++S E ED+D  KEY E TNR  V+
Sbjct: 2   VLSMTNSSTTEHELLGYQPNSYVLQKFWEHCQQQLDVSYEVEDDDVTKEYSEGTNRCDVL 61

Query: 363 IAAAKLVASGTVSKEYLAPEIISHFVMHGTSIAEIVKHLIT 403
           IAA KL+ +  V K+YLAPEIISHFV HGT +AEIVK LIT
Sbjct: 62  IAACKLITNDVVPKDYLAPEIISHFVRHGTDVAEIVKLLIT 102


>IMGA|Medtr3g067530.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 15502935-15504164 H
           EGN_Mt090430 20090702
          Length = 121

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 38/50 (76%)

Query: 348 SNKEYIEETNRDAVVIAAAKLVASGTVSKEYLAPEIISHFVMHGTSIAEI 397
           +N    + +NR AV+IAA KL+ +  V K+YLAPEIISHFVMHGT +AEI
Sbjct: 11  NNSLMFQGSNRCAVLIAACKLITNDVVPKDYLAPEIISHFVMHGTDVAEI 60