Jatropha Genome Database

JcCA0299021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0299021.10 + phase: 0 
         (337 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g013180.1 Thioredoxin-like fold chr03_pseudomolecule_...   125   2e-29

>IMGA|Medtr3g013180.1 Thioredoxin-like fold
           chr03_pseudomolecule_IMGAG_V3 2443702-2438042 F
           EGN_Mt090430 20090702
          Length = 323

 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 111/191 (58%), Gaps = 13/191 (6%)

Query: 125 SSKVGPRPEKPIEIYEFESFLLMFASNCKYVQ-VREIVSVLDIDVLFYPCPKNGPTFRPK 183
           S K+   P   ++++EFE+        C + + VRE ++ LD+ V  YPCPK     R  
Sbjct: 111 SEKIASEPPISLQLFEFEA--------CPFCRRVREAMTELDLSVEVYPCPKGSVRHREV 162

Query: 184 VVQMGGKQQFPYMVDPNTGTAMYESDDIIKYLVEKYGDGTVPFMXXXXXXXXXXEGFAMI 243
           V + GGK+ FP+++D N+G +MYES DI+KYL E+YG+G  P +               I
Sbjct: 163 VRKTGGKEMFPFLIDQNSGVSMYESSDIVKYLFERYGEGRSPSLGLLESTIFTG-WMPTI 221

Query: 244 GRMGKGSS-YTPSKL--PPKPLEIWSYEGSPFCKIVREALVESELPHIQRSCARGSPKRQ 300
            R G+G + +  S++  PP  LE++SYE +P  +IVREAL E ELP+I ++   GS + +
Sbjct: 222 IRAGRGMTLWERSRVEPPPTKLELFSYENNPDARIVREALCELELPYILQNVGEGSRRMK 281

Query: 301 ALYEKAGHFQV 311
            L++ +G  +V
Sbjct: 282 LLFDASGSKEV 292