Jatropha Genome Database

JcCA0297911.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297911.20 - phase: 1 /partial
         (346 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g024700.1 Intron maturase, type II; RNA-directed DNA ...   614   e-176
IMGA|Medtr2g007990.1 Intron maturase, type II; RNA-directed DNA ...   454   e-128
IMGA|Medtr2g129460.1 hypothetical protein chr02_pseudomolecule_I...    80   1e-15
IMGA|AC235675_1.1 hypothetical protein AC235675.1 1746-1469 E EG...    59   3e-09
IMGA|Medtr2g129470.1 hypothetical protein chr02_pseudomolecule_I...    59   3e-09

>IMGA|Medtr2g024700.1 Intron maturase, type II; RNA-directed DNA
           polymerase (Reverse transcriptase)
           chr02_pseudomolecule_IMGAG_V3 6351166-6349094 E
           EGN_Mt090430 20090702
          Length = 690

 Score =  614 bits (1584), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 283/333 (84%), Positives = 313/333 (93%)

Query: 2   LDSIWRDSIDDGCHNPSWPEFVPSSGKEKTRKMDYIRYGGHFLIGIRGPREDAVQIRKEI 61
            DSIW+ SIDDGCHNP+WPEFVPSSGKEKTRKMDYIRYGGHFLIGIRGPREDAV+IRK+I
Sbjct: 348 FDSIWKYSIDDGCHNPAWPEFVPSSGKEKTRKMDYIRYGGHFLIGIRGPREDAVEIRKKI 407

Query: 62  IEFCDAKLGIRLDNSKIEIEHITRGIQFLDHIICRRVIYPTLHYTASGGKIVSERGVGTL 121
           +EFC+   G+RLDNSK+EIEHI RGIQFLDHIICRRVI+PTL YT SGG IVSE+GVGTL
Sbjct: 408 VEFCENTFGLRLDNSKLEIEHIARGIQFLDHIICRRVIHPTLRYTGSGGNIVSEKGVGTL 467

Query: 122 LSVTASLQQCIRQFRRLQFVKGDKDPEPLPCNPMLYSSQAHTNAQMNKFLETMADWYRYA 181
           LSVTASLQQCIRQFR+L+ VKGDKDPEPLPCNPMLYS QAHTN+QMNKFLETMADWY+YA
Sbjct: 468 LSVTASLQQCIRQFRQLELVKGDKDPEPLPCNPMLYSGQAHTNSQMNKFLETMADWYKYA 527

Query: 182 DNRKKVVGFCAYVIRSSLAKLYAARYRLKSRAKVYKIASRDLSRPLRESSNNSAPEYSDL 241
           DNRKKVVGFCAYV+RSSLAKLYAARYRLKSRAKVY IASR+LSRPLRES+NNSAPEYSDL
Sbjct: 528 DNRKKVVGFCAYVVRSSLAKLYAARYRLKSRAKVYGIASRNLSRPLRESTNNSAPEYSDL 587

Query: 242 LRMGLVDAIEGVQFSHMSLIPSCDYTPFPRNWIPDHERVLHEYIRLQDPKFFCELWRSIK 301
           LRMGLVDAIEGVQFSHMSLIPSCDYTPFPRNWIPDHERVL EYI+L +PKFFC+L R IK
Sbjct: 588 LRMGLVDAIEGVQFSHMSLIPSCDYTPFPRNWIPDHERVLQEYIKLDNPKFFCDLLRYIK 647

Query: 302 HQSLTLPQDEISEIVWDYKTLGIRRYQSSGEKE 334
            + L++PQDEIS++VWDYKTLG+R ++S+ +KE
Sbjct: 648 QKGLSIPQDEISQMVWDYKTLGVRYFRSNRDKE 680


>IMGA|Medtr2g007990.1 Intron maturase, type II; RNA-directed DNA
           polymerase (Reverse transcriptase)
           chr02_pseudomolecule_IMGAG_V3 1343521-1348850 E
           EGN_Mt090430 20090702
          Length = 799

 Score =  454 bits (1168), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 207/321 (64%), Positives = 256/321 (79%), Gaps = 2/321 (0%)

Query: 1   KLDSIWRDSIDDGCH-NPSWPEFVPSSGKEKTRKMDYIRYGGHFLIGIRGPREDAVQIRK 59
           K D IW     +    N SWPEFVP+SG +KTRKMD+IRYGGH LIG+RGPR D   +RK
Sbjct: 353 KSDVIWNSPEGEAEQGNTSWPEFVPTSGPDKTRKMDFIRYGGHVLIGVRGPRADTATLRK 412

Query: 60  EIIEFCDAKLGIRLDNSKIEIEHITRGIQFLDHIICRRVIYPTLHYTASGGKIVSERGVG 119
           ++IEFCD K  I+LDN  + IEHIT+GI FLDH++CRRV+YPTL YTA+GGKI+SE+GVG
Sbjct: 413 QLIEFCDQKFMIKLDNECLPIEHITKGIMFLDHVLCRRVVYPTLRYTATGGKIISEKGVG 472

Query: 120 TLLSVTASLQQCIRQFRRLQFVKGDKDPEPLPCNPMLYSSQAHTNAQMNKFLETMADWYR 179
           TLLSVTASL+QCIRQFR+L F+KGD+DP+P PC  M +++QAHTNAQMNKFL TM +WYR
Sbjct: 473 TLLSVTASLKQCIRQFRKLSFLKGDRDPDPQPCFRMFHATQAHTNAQMNKFLSTMVEWYR 532

Query: 180 YADNRKKVVGFCAYVIRSSLAKLYAARYRLKSRAKVYKIASRDLSRPLRESSNNSAPEYS 239
           +ADNRKK+V FC+Y+IR SLAKLYAA+Y+L+SRAKVYKI +R+LSRPL+E    S PEY 
Sbjct: 533 FADNRKKIVNFCSYIIRGSLAKLYAAKYKLRSRAKVYKIGARNLSRPLKEKKGQS-PEYQ 591

Query: 240 DLLRMGLVDAIEGVQFSHMSLIPSCDYTPFPRNWIPDHERVLHEYIRLQDPKFFCELWRS 299
           +LLRMGL ++I+G+Q++ MSL+P  DYTPFP NW PDH + L EYI+L DPK   E    
Sbjct: 592 NLLRMGLAESIDGLQYTRMSLVPETDYTPFPGNWRPDHVKALLEYIKLADPKTLEEQQSC 651

Query: 300 IKHQSLTLPQDEISEIVWDYK 320
           I+ Q L  PQD IS +VW+YK
Sbjct: 652 IREQGLVTPQDYISMLVWNYK 672


>IMGA|Medtr2g129460.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 31311412-31312490 E
           EGN_Mt090430 20090702
          Length = 137

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 46/56 (82%)

Query: 60  EIIEFCDAKLGIRLDNSKIEIEHITRGIQFLDHIICRRVIYPTLHYTASGGKIVSE 115
           ++IEFCD KL I+LDN  + IEH+T+ I FLDH++ RRV+YPTL YTA+ GKI+SE
Sbjct: 54  KLIEFCDQKLKIKLDNECLPIEHLTKCIMFLDHVLWRRVVYPTLGYTATDGKIISE 109


>IMGA|AC235675_1.1 hypothetical protein AC235675.1 1746-1469 E
           EGN_Mt090430 20090702
          Length = 81

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 10/49 (20%)

Query: 174 MADWYRYADNRKKVVGFCAYVIRSSLAKLYAARYRLKSRAKVYKIASRD 222
           M +WYR+ADNRKK+V FC+Y+I  SLAK          RAKVYKI +R+
Sbjct: 1   MVEWYRFADNRKKIVNFCSYIIIGSLAK----------RAKVYKIGARN 39


>IMGA|Medtr2g129470.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 31313467-31313744 E
           EGN_Mt090430 20090702
          Length = 81

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 10/49 (20%)

Query: 174 MADWYRYADNRKKVVGFCAYVIRSSLAKLYAARYRLKSRAKVYKIASRD 222
           M +WYR+ADNRKK+V FC+Y+I  SLAK          RAKVYKI +R+
Sbjct: 1   MVEWYRFADNRKKIVNFCSYIIIGSLAK----------RAKVYKIGARN 39