Jatropha Genome Database

JcCA0297821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297821.20 - phase: 0 /partial
         (93 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g083710.1 Transcription factor jumonji, jmjC chr01_ps...    50   2e-07

>IMGA|Medtr1g083710.1 Transcription factor jumonji, jmjC
           chr01_pseudomolecule_IMGAG_V3 16593604-16601881 E
           EGN_Mt090430 20090702
          Length = 539

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 7/78 (8%)

Query: 1   VVGKKYIRLYPASLSEELYP---YSETMLHNSSQVDLDNMDEKEFPKVHDL-EF-LDCIL 55
           V G+K + L+P S S  LYP   Y E   H+S  V L+N D   +P+  DL EF    +L
Sbjct: 201 VSGRKQVVLWPPSASSSLYPMPIYGEASNHSS--VALENPDYSIYPRAEDLMEFGQKVVL 258

Query: 56  EEGEMLYIPPKWWHYVRS 73
           E G+ L+IP  W+H V S
Sbjct: 259 EAGDALFIPEGWFHQVDS 276