Jatropha Genome Database

JcCA0297521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297521.10 + phase: 0 /partial
         (342 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g025290.1 Carotenoid oxygenase chr05_pseudomolecule_I...   364   e-101
IMGA|Medtr5g025250.1 Carotenoid oxygenase chr05_pseudomolecule_I...   351   3e-97
IMGA|Medtr5g025270.1 Carotenoid oxygenase chr05_pseudomolecule_I...   341   4e-94

>IMGA|Medtr5g025290.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10116366-10118405 E
           EGN_Mt090430 20090702
          Length = 581

 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/301 (59%), Positives = 214/301 (71%), Gaps = 1/301 (0%)

Query: 43  PSKLFLTHKTTPTSFPLPLLNVSSVRIEEKPQXXXXXXXXXXXXXXXXXXXXXXXINISA 102
           P  + +T K  PT+  +P  N+SS++ +EKPQ                          + 
Sbjct: 3   PKPIIITSKQPPTTSSIPPFNISSIKTKEKPQTSQSQTLKTTTTTPPTKTLPTPPTITTT 62

Query: 103 ATAKRRVEPSLPTMVFNAFDGIINNFIDPPLKPGVDPGHVLSDNFAPV-DELPPTDCEVI 161
              K+    SLP ++FN FD IIN FIDPP+KP VDP HVLS NFAPV DELPPT C+VI
Sbjct: 63  HNLKKPQTSSLPALLFNTFDDIINTFIDPPIKPSVDPRHVLSQNFAPVLDELPPTQCKVI 122

Query: 162 EGSLPSCLDGAYIRNGPNPQYLPKGPYHLFDGDGMLHSIRISQGKAKLCSRYVKTYKYIK 221
           +G+LP  L+G YIRNGPNPQ+LP+GPYHLFDGDGMLH+I IS GKA LCSRYV+TYKY  
Sbjct: 123 KGTLPPSLNGVYIRNGPNPQFLPRGPYHLFDGDGMLHAITISNGKATLCSRYVQTYKYKI 182

Query: 222 ERDAGAPLLPNVFSGFNXXXXXXXXXXXXXXXILSGQFNPANGIGLANTSLAFFGNRLYA 281
           E +AG  L+PNVFSGFN               ++SGQ+NP+NGIGLANTSLA FGN+L+A
Sbjct: 183 ENEAGYQLIPNVFSGFNSLIASAARGSVTAARVISGQYNPSNGIGLANTSLALFGNKLFA 242

Query: 282 LGESDLPYVVRLTPNGDIETVGRHDFDGKLFFSMTAHPKIDLETGETFAFRYAPIPPFLT 341
           LGESDLPY + LTPNGDI+T+GR+DF+GKL  SMTAHPKID +TGETFAFRY P+PPFLT
Sbjct: 243 LGESDLPYEINLTPNGDIQTIGRYDFNGKLSMSMTAHPKIDGDTGETFAFRYGPMPPFLT 302

Query: 342 Y 342
           Y
Sbjct: 303 Y 303


>IMGA|Medtr5g025250.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10093326-10091325 E
           EGN_Mt090430 20090702
          Length = 578

 Score =  351 bits (900), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 179/303 (59%), Positives = 207/303 (68%), Gaps = 4/303 (1%)

Query: 41  VPPSKLFLTHKTTPTSFPLPLLNVSSVRIEEKPQXXXXXXXXXXXXXXXXXXXXXXXINI 100
           VP   + LT K  PT  P+P  N++ VR +EKPQ                        + 
Sbjct: 2   VPKPIIILTTKQPPT-IPIPQFNIAFVRTQEKPQTSQPHETLRTGSPAKTKTLLTSQKH- 59

Query: 101 SAATAKRRVEPSLPTMVFNAFDGIINNFIDPPLKPGVDPGHVLSDNFAPV-DELPPTDCE 159
              T KR    S+  ++ N  D IIN FIDPP+KP VDP HVLS NFAPV DELPPT C 
Sbjct: 60  -KNTNKRLQTSSISALILNTLDDIINTFIDPPIKPSVDPRHVLSQNFAPVLDELPPTQCV 118

Query: 160 VIEGSLPSCLDGAYIRNGPNPQYLPKGPYHLFDGDGMLHSIRISQGKAKLCSRYVKTYKY 219
           +I+G+LP  L GAYIRNGPNPQ+LP+GPYHLFDGDGMLH+I IS GKA LCSRYVKTYKY
Sbjct: 119 IIKGTLPPSLYGAYIRNGPNPQFLPRGPYHLFDGDGMLHAITISNGKATLCSRYVKTYKY 178

Query: 220 IKERDAGAPLLPNVFSGFNXXXXXXXXXXXXXXXILSGQFNPANGIGLANTSLAFFGNRL 279
             E  AG  L+PNVFSGFN               +L+GQ+NP+NGIGL NTSLA FGNRL
Sbjct: 179 KIENKAGHQLIPNVFSGFNSLIALAARGSVVVARVLTGQYNPSNGIGLVNTSLALFGNRL 238

Query: 280 YALGESDLPYVVRLTPNGDIETVGRHDFDGKLFFSMTAHPKIDLETGETFAFRYAPIPPF 339
           +ALGESDLPY V+LTPNGDI+T+GR+DF+GKL  SMTAHPKID +T E FAFRY PI PF
Sbjct: 239 FALGESDLPYEVKLTPNGDIQTMGRYDFNGKLLMSMTAHPKIDSDTSECFAFRYGPIRPF 298

Query: 340 LTY 342
           LTY
Sbjct: 299 LTY 301


>IMGA|Medtr5g025270.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10102084-10100345 E
           EGN_Mt090430 20090702
          Length = 579

 Score =  341 bits (874), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 170/303 (56%), Positives = 208/303 (68%), Gaps = 3/303 (0%)

Query: 41  VPPSKLFLTHKTTPTSFPLPLLNVSSVRIEEKPQXXXXXXXXXXXXXXXXXXXXXXXINI 100
           VP   + +  K  PT++ +P  N +SVR +EKPQ                          
Sbjct: 2   VPKPIIIIACKQPPTTY-IPQFNTASVRTKEKPQTSQPKTLRTTPTKTLLALLTTTTQK- 59

Query: 101 SAATAKRRVEPSLPTMVFNAFDGIINNFIDPPLKPGVDPGHVLSDNFAPV-DELPPTDCE 159
              T K     S+  ++ N  D IIN FIDPP+KP VDP HVLS NFAPV DELPPT C+
Sbjct: 60  LKNTNKTLQTSSISALILNTLDDIINTFIDPPIKPSVDPRHVLSQNFAPVLDELPPTQCK 119

Query: 160 VIEGSLPSCLDGAYIRNGPNPQYLPKGPYHLFDGDGMLHSIRISQGKAKLCSRYVKTYKY 219
           VI+G+LP  L+G YIRNGPNPQ+LP+GPYHLFDGDGMLH+++I+ GKA LCSRYV+TYKY
Sbjct: 120 VIKGTLPPSLNGVYIRNGPNPQFLPRGPYHLFDGDGMLHAVKITNGKATLCSRYVQTYKY 179

Query: 220 IKERDAGAPLLPNVFSGFNXXXXXXXXXXXXXXXILSGQFNPANGIGLANTSLAFFGNRL 279
             E +AG  +LPNVFSGFN               +L+GQ+NP NGIGL NTSLA FGNRL
Sbjct: 180 KIENEAGYQILPNVFSGFNSLIGLAARGSVAVARVLTGQYNPINGIGLINTSLALFGNRL 239

Query: 280 YALGESDLPYVVRLTPNGDIETVGRHDFDGKLFFSMTAHPKIDLETGETFAFRYAPIPPF 339
           +ALGESDLPY +++TPNGDI+T+GR+DF+GKLF +MTAHPKID +TGE FA+RY  I PF
Sbjct: 240 FALGESDLPYEIKVTPNGDIQTIGRYDFNGKLFMNMTAHPKIDSDTGECFAYRYGLIRPF 299

Query: 340 LTY 342
           LTY
Sbjct: 300 LTY 302