Jatropha Genome Database

JcCA0297261.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297261.20 + phase: 1 /pseudo/partial
         (659 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g114540.1 Raffinose synthase chr03_pseudomolecule_IMG...   343   1e-94
IMGA|Medtr7g133220.1 Raffinose synthase chr07_pseudomolecule_IMG...   172   5e-43
IMGA|Medtr4g136550.1 Raffinose synthase chr04_pseudomolecule_IMG...   169   5e-42
IMGA|Medtr8g121390.1 Raffinose synthase chr08_pseudomolecule_IMG...   162   4e-40
IMGA|Medtr5g104440.1 Raffinose synthase chr05_pseudomolecule_IMG...   152   4e-37
IMGA|Medtr5g104440.2 Raffinose synthase chr05_pseudomolecule_IMG...   128   1e-29
IMGA|Medtr5g074630.1 Raffinose synthase chr05_pseudomolecule_IMG...   107   1e-23
IMGA|Medtr7g062070.1 Raffinose synthase chr07_pseudomolecule_IMG...    57   3e-08

>IMGA|Medtr3g114540.1 Raffinose synthase
           chr03_pseudomolecule_IMGAG_V3 29013492-29016790 E
           EGN_Mt090430 20090702
          Length = 786

 Score =  343 bits (881), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 163/253 (64%), Positives = 205/253 (81%), Gaps = 2/253 (0%)

Query: 407 AISGGPIYVSGQIQQHNFNLLKTSVLPDGSVLRCQSHALPTRDCLFDDPLHDGKTMLKLW 466
           A+SGGPIYVS  +  HNF LLKT VLPDGS+LRCQ +ALPTRDCLF+DPLHDG+TMLK+W
Sbjct: 536 AVSGGPIYVSDCVGNHNFKLLKTLVLPDGSILRCQHYALPTRDCLFEDPLHDGQTMLKIW 595

Query: 467 NLNKYIGVLGLFNCQGGGWCCITRRNMGAPKFKNRMDCLAGPKDIEWENGKNPVAINTEG 526
           NLNKY GVLGLFNCQGGGWC  TRRN  A +F + + C A P+DIEW NGK+P+ I  +G
Sbjct: 596 NLNKYTGVLGLFNCQGGGWCPETRRNKSASEFSHLVTCYASPEDIEWCNGKSPMCI--KG 653

Query: 527 VSRFAVYLFQEQKLKLMKPTEKLEFSLEPFTYELLIVSPVQALSRKLIQFAPIGLVNMLN 586
           V  FAVY F+E+KLKLMK ++KLE SLEPF++EL+ VSPV+  S+ LIQFAPIGLVNMLN
Sbjct: 654 VDVFAVYFFKEKKLKLMKCSDKLEVSLEPFSFELMTVSPVRVFSKGLIQFAPIGLVNMLN 713

Query: 587 SGGAIQSVEVDENGNSVRIGVKGSGEWRIFASQEPNECKIDGMCMEFCYDDCMVKIQVPW 646
           SGGA+QSVE D++ + V+IGV+G GE  +FAS++P  CKIDG+ ++F Y D MV++Q+PW
Sbjct: 714 SGGAVQSVEFDDHASLVKIGVRGCGEMSVFASEKPVCCKIDGVAVKFDYVDKMVRVQIPW 773

Query: 647 LRSPGISMVDYFF 659
             S  +S+V++ F
Sbjct: 774 PSSSTLSLVEFLF 786



 Score =  230 bits (586), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 147/353 (41%), Positives = 191/353 (54%), Gaps = 52/353 (14%)

Query: 24  PLSITLEESNFLANGHPILKQVPTNIVITPSAA---------------DCFVGFVLMSQE 68
           PLSITL +S FLANGHP L QVP NI  T  +                 CFVGF   + E
Sbjct: 25  PLSITLNDSCFLANGHPFLTQVPPNITTTTPSPFLHNSKSNYNTTLQHGCFVGF--NTTE 82

Query: 69  AGTQHRLASXEAXGLXAYSDSSCGGTLIGLAIAE----KTW-------KXKPKXSFWTEL 117
             + H +                 G L G+        K W           +    T++
Sbjct: 83  PKSHHVVPL---------------GKLKGIRFMSIFRFKVWWTTHWTGTNGHELEHETQM 127

Query: 118 RSTDSN----RPYDLLLPLIEGSFRSSLQASIEDDDVDICVDSGSSLVTEFSFRSRLYMH 173
              D N    RPY LLLP+IE SFR+SLQ  + D  VDIC +SGS+ V E  F+S LY+H
Sbjct: 128 LILDQNKSLGRPYVLLLPIIENSFRTSLQPGVHDY-VDICTESGSTHVLESHFKSCLYIH 186

Query: 174 VFFDPYRVIKDAVKVVRSHLGTFKLSGEKTPPSIVDRFGWCTWDSVYRGWILNQLKMGSV 233
           V  DPYR++K+A+KV+R+HLGTFKL  EKTPP+I+D+FGWCTWD+ Y       +  G  
Sbjct: 187 VSNDPYRLVKEAMKVIRTHLGTFKLLQEKTPPNIIDKFGWCTWDAFYLKVHPKGVWEGVK 246

Query: 234 AYKRVGALQIGSLLMVVGNPFVMMIKTPSDDVEGVDRMVAGTIKPNESPRLKSIQVNYKF 293
                G    G +L+  G   +     P  D EG++R  AG   P    RL   + NYKF
Sbjct: 247 GLTE-GGCPPGLVLIDDGWQSICHDDDPITDQEGMNRTSAGEQMPC---RLIKYEENYKF 302

Query: 294 RNYESSRVPFSKGMGVFSKDLKKEFRALDYVYVWHALLGYWGRIRPNVHGMPQ 346
           R Y+S +   +KGMG F +DLK+EF++++ VYVWHAL GYWG +RP V GMP+
Sbjct: 303 REYKSPKNECNKGMGGFIRDLKEEFKSVENVYVWHALCGYWGGVRPKVKGMPE 355


>IMGA|Medtr7g133220.1 Raffinose synthase
           chr07_pseudomolecule_IMGAG_V3 31103102-31108693 H
           EGN_Mt090430 20090702
          Length = 486

 Score =  172 bits (435), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 96/247 (38%), Positives = 141/247 (57%), Gaps = 7/247 (2%)

Query: 407 AISGGPIYVSGQIQQHNFNLLKTSVLPDGSVLRCQSHALPTRDCLFDDPLHDGKTMLKLW 466
           AI GGPIY+S  +  H+F+L+K  V PDG++ +C    LPT DCLF  PL D   +LK+W
Sbjct: 151 AICGGPIYLSDDVGFHDFDLIKKLVFPDGTIPKCIHFPLPTTDCLFKYPLFDKTIVLKIW 210

Query: 467 NLNKYIGVLGLFNCQGGGWCCITRRNMGAPKFKNRMDCLAGPKDIEWENGKNPVAINTEG 526
           N NKY GV+G FNCQG GW     +  G P+  N +       ++EW+  K   A +   
Sbjct: 211 NFNKYGGVIGAFNCQGAGWDPKEHKLRGFPECYNPIVGTVHVTEVEWDQKKE--ASHLGK 268

Query: 527 VSRFAVYLFQEQKLKLMKP-TEKLEFSLEPFTYELLIVSPVQALSRKLIQFAPIGLVNML 585
              + VY  Q ++L LM P +E ++F ++P T+EL     V+      I+FAPIGL NM 
Sbjct: 269 AEEYVVYFNQAEELCLMTPNSESIQFIIQPSTFELYNFVQVKKFGGT-IKFAPIGLTNMF 327

Query: 586 NSGGAIQSVEVDENGNSVRIGVKGSGEWRIFASQEPNECKIDGMCMEFCY-DDCMVKIQV 644
           NSGG I  +E  E+G   +I VKG G +  ++S+ P + +++G  + F +  D  + + V
Sbjct: 328 NSGGTILDLEYVESG--AKIKVKGGGNFLAYSSESPKKFQLNGFEVAFEWMGDEKLTLNV 385

Query: 645 PWLRSPG 651
           PW+   G
Sbjct: 386 PWIDEAG 392


>IMGA|Medtr4g136550.1 Raffinose synthase
           chr04_pseudomolecule_IMGAG_V3 33377578-33374117 H
           EGN_Mt090430 20090702
          Length = 836

 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 147/258 (56%), Gaps = 26/258 (10%)

Query: 407 AISGGPIYVSGQIQQHNFNLLKTSVLPDGSVLRCQSHALPTRDCLFDDPLHDGKTMLKLW 466
           AI GGP+Y+S  +  H+F+L+K  V PDG++ +C    LPTRDCLF +PL D  ++LK+W
Sbjct: 600 AICGGPVYLSDNVGSHDFDLIKKLVFPDGTIPKCIHFPLPTRDCLFKNPLFDQTSVLKIW 659

Query: 467 NLNKYIGVLGLFNCQGGGWCCITRRNMGAPKFKNRMDCLAGPKDIEWENGKNPV--AINT 524
           N NKY GV+G FNCQG GW      +    KF+   +C              P+   ++ 
Sbjct: 660 NFNKYGGVIGAFNCQGAGW------DPKEHKFRGFPECY------------KPITGTVHV 701

Query: 525 EGVSRFAVYLFQEQKLKLMKP-TEKLEFSLEPFTYELLIVSPVQALSRKLIQFAPIGLVN 583
                + VY  Q ++L+LM P +E +++ ++P T+EL    P+  L    I+FAPIGL N
Sbjct: 702 TEAEEYVVYFNQAEELRLMTPKSEPIKYIIQPSTFELYNFVPLTKLGGN-IKFAPIGLTN 760

Query: 584 MLNSGGAIQSVEVDENGNSVRIGVKGSGEWRIFASQEPNECKIDGMCMEFCY-DDCMVKI 642
           M NSGG +  +E  E+G   +I VKG G +  ++S+ P + +++G  + F +  D  + +
Sbjct: 761 MFNSGGTVLDLEYAESG--AKIQVKGGGNFLAYSSESPKKFQLNGSEVAFEWLGDGKLSL 818

Query: 643 QVPWL-RSPGISMVDYFF 659
            V W+  + G+S +  FF
Sbjct: 819 NVSWIEEASGVSELAIFF 836



 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 1/97 (1%)

Query: 124 RPYDLLLPLIEGSFRSSLQASIEDDDVDICVDSGSSLVTEFSFRSRLYMHVFFDPYRVIK 183
           R Y +++P+IE  FRS+L     DD   IC +SGS+ V   SF +  Y+H   +PY ++K
Sbjct: 133 RSYAVIIPIIENGFRSALHPG-SDDHFMICAESGSTKVKALSFNAIAYVHFSENPYDLMK 191

Query: 184 DAVKVVRSHLGTFKLSGEKTPPSIVDRFGWCTWDSVY 220
           +A   +R HL TF+L  EKT P++VD+FGWCTWD+ Y
Sbjct: 192 EAYSALRVHLNTFRLLEEKTLPNLVDKFGWCTWDAFY 228


>IMGA|Medtr8g121390.1 Raffinose synthase
           chr08_pseudomolecule_IMGAG_V3 28117332-28114408 E
           EGN_Mt090430 20090702
          Length = 795

 Score =  162 bits (411), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 85/231 (36%), Positives = 134/231 (58%), Gaps = 5/231 (2%)

Query: 407 AISGGPIYVSGQIQQHNFNLLKTSVLPDGSVLRCQSHALPTRDCLFDDPLHDGKTMLKLW 466
           AISGGP+YVS +   H+F+LLK  VLPDGSVLR +    PT DCLF+DP  DG ++LK+W
Sbjct: 544 AISGGPVYVSDKPGNHDFDLLKKMVLPDGSVLRARLPGRPTADCLFNDPARDGASLLKIW 603

Query: 467 NLNKYIGVLGLFNCQGGGWCCITRRNMGAPKFKNRMDCLAGPKDIEWENGKNPVAINTEG 526
           N+N   GVLG++NCQG  WC   R+N         +      +D+   +    VA + + 
Sbjct: 604 NMNACGGVLGVYNCQGAAWCANERKNAFHETDSAALTGYVRGRDVHLIS--EAVAGDGDW 661

Query: 527 VSRFAVYLFQEQKLKLMKPTEKLEFSLEPFTYELLIVSPVQALSRKLIQFAPIGLVNMLN 586
               A Y    ++L ++     +  +L+   +E+  V+PV+  +    +FAPIGLVNM N
Sbjct: 662 NGDCAFYAHHSRELVVLPHNVAMPLTLKVLEHEVFAVAPVKVFNSGY-RFAPIGLVNMFN 720

Query: 587 SGGAIQSVEVDENGNSVRIGVKGSGEWRIFASQEPNECKIDGMCMEFCYDD 637
           +GGA++ +   +  ++VR+ +KG G++  + S  P  C ++   ++F YD+
Sbjct: 721 AGGAVEGLVYKD--DAVRLEIKGCGKFGAYCSARPTRCLLEDSVVDFEYDN 769



 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 24/229 (10%)

Query: 121 DSNRPYDLLLPLIEGSFRSSLQASIEDDDVDICVDSGSSLVTEFSFRSRLYMHVFFDPYR 180
           DS+  Y + LPL+EGSFR+ LQ ++ +D++++C++SG       SF   L++    DP+ 
Sbjct: 167 DSDITYTIFLPLVEGSFRACLQGNVSNDNLELCIESGDVDTKTSSFSHALFITAGTDPFA 226

Query: 181 VIKDAVKVVRSHLGTFKLSGEKTPPSIVDRFGWCTWDSVYRGWILNQLKMGSVAYKRVGA 240
            I +A   VR+HL TF+L  EK  P IVD FGWCTWD+ Y+      ++ G      + +
Sbjct: 227 TIHNAFTAVRNHLNTFRLRHEKKLPGIVDYFGWCTWDAFYQDVTQEGVEDG------LQS 280

Query: 241 LQIGSLLMVVGNPFVMMIKTPSDDVEGVDRMVAGTIKPNES-PRLKSIQVNYKFRNYESS 299
           L  G      G P   +I      ++   + VAG ++ + S  RL  I+ N KF+N E+ 
Sbjct: 281 LSGG------GTPPKFVI------IDDGWQSVAGDLEDSSSLQRLTDIKENPKFQNKENP 328

Query: 300 RVPFSKGMGVFSKDLKKEFRALDYVYVWHALLGYWGRIRPNVHGMPQFA 348
            V     +     ++ KE   + +VYVWHA+ GYWG +RP +    ++ 
Sbjct: 329 EVGIKSIV-----NIAKEKHGVKFVYVWHAITGYWGGVRPGLKDTEEYG 372


>IMGA|Medtr5g104440.1 Raffinose synthase
           chr05_pseudomolecule_IMGAG_V3 41888825-41893209 F
           EGN_Mt090430 20090702
          Length = 760

 Score =  152 bits (385), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 6/222 (2%)

Query: 407 AISGGPIYVSGQIQQHNFNLLKTSVLPDGSVLRCQSHALPTRDCLFDDPLHDGKTMLKLW 466
           A+ G PIYVS +   H+FNLLK  VLPDGS+LR +    PT+DCLF DP  DGK++LK+W
Sbjct: 509 AVGGCPIYVSDKPGHHDFNLLKKLVLPDGSILRAKLPGRPTKDCLFSDPARDGKSLLKIW 568

Query: 467 NLNKYIGVLGLFNCQGGGWCCITRRNMGAPKFKNRMDCLAGPKDIEWENGKNPVAINTEG 526
           N+N Y GV+G+FNCQG GWC + ++N+   +    +  +   KDI+  +       + + 
Sbjct: 569 NMNDYSGVVGVFNCQGAGWCKVGKKNLIHDENPGTVTDIIRAKDIDHLS----TVADDKW 624

Query: 527 VSRFAVYLFQEQKLKLMKPTEKLEFSLEPFTYELLIVSPVQALSRKLIQFAPIGLVNMLN 586
                ++     ++  +     +  +++   YEL  + PV+ L    ++FAPIGL+ M N
Sbjct: 625 TGDAVIFSHLRGEVVYLPKDVSIPITMKSREYELFTIVPVKELPNG-VKFAPIGLIKMFN 683

Query: 587 SGGAIQSVEVDENG-NSVRIGVKGSGEWRIFASQEPNECKID 627
           SGGA++      NG  +V + V+G G +  ++S +P    +D
Sbjct: 684 SGGAVKEFSSGFNGVANVSMKVRGCGLFGAYSSAQPKLITVD 725



 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 14/225 (6%)

Query: 126 YDLLLPLIEGSFRSSLQASIEDDDVDICVDSGSSLVTEFSFRSRLYMHVFFDPYRVIKDA 185
           Y +LLPL+EG FR+ LQ + + ++++ICV+SG   V EF     +++    DPY+VI +A
Sbjct: 123 YAVLLPLLEGDFRAVLQGN-DQNEIEICVESGCPDVEEFDGTHLVFIGAGSDPYKVITNA 181

Query: 186 VKVVRSHLGTFKLSGEKTPPSIVDRFGWCTWDSVYRGWILNQLKMGSVAYKRVGALQIGS 245
           VK V  HL TF     K  P +++ FGWCTWD+ Y       +K G  +++  G   I +
Sbjct: 182 VKTVEKHLKTFCHRERKKMPDMLNWFGWCTWDAFYTNVTSENVKEGLQSFEEGG---IPA 238

Query: 246 LLMVVGNPFVMMIKTPSDDVEGVDRMVAGTIKPNESPRLKSIQVNYKFRN--YESSRVPF 303
             +++ + +    ++ S D  GV+         N + RL  I+ N+KF+    E  R+  
Sbjct: 239 KFVIIDDGW----QSVSMDPNGVEW--KHDCAANFANRLTHIKENHKFQKDGKEGQRIED 292

Query: 304 -SKGMGVFSKDLKKEFRALDYVYVWHALLGYWGRIRPNVHGMPQF 347
            + G+   + ++KKE  A+ +VYVWHA+ GYWG ++P + GM  +
Sbjct: 293 PAMGLHHITNEIKKE-HAIKHVYVWHAITGYWGGVKPGISGMEHY 336


>IMGA|Medtr5g104440.2 Raffinose synthase
           chr05_pseudomolecule_IMGAG_V3 41888825-41893222 F
           EGN_Mt090430 20090702
          Length = 518

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 14/225 (6%)

Query: 126 YDLLLPLIEGSFRSSLQASIEDDDVDICVDSGSSLVTEFSFRSRLYMHVFFDPYRVIKDA 185
           Y +LLPL+EG FR+ LQ + + ++++ICV+SG   V EF     +++    DPY+VI +A
Sbjct: 123 YAVLLPLLEGDFRAVLQGN-DQNEIEICVESGCPDVEEFDGTHLVFIGAGSDPYKVITNA 181

Query: 186 VKVVRSHLGTFKLSGEKTPPSIVDRFGWCTWDSVYRGWILNQLKMGSVAYKRVGALQIGS 245
           VK V  HL TF     K  P +++ FGWCTWD+ Y       +K G  +++  G   I +
Sbjct: 182 VKTVEKHLKTFCHRERKKMPDMLNWFGWCTWDAFYTNVTSENVKEGLQSFEEGG---IPA 238

Query: 246 LLMVVGNPFVMMIKTPSDDVEGVDRMVAGTIKPNESPRLKSIQVNYKFRN--YESSRVPF 303
             +++ + +    ++ S D  GV+         N + RL  I+ N+KF+    E  R+  
Sbjct: 239 KFVIIDDGW----QSVSMDPNGVEW--KHDCAANFANRLTHIKENHKFQKDGKEGQRIED 292

Query: 304 -SKGMGVFSKDLKKEFRALDYVYVWHALLGYWGRIRPNVHGMPQF 347
            + G+   + ++KKE  A+ +VYVWHA+ GYWG ++P + GM  +
Sbjct: 293 PAMGLHHITNEIKKE-HAIKHVYVWHAITGYWGGVKPGISGMEHY 336


>IMGA|Medtr5g074630.1 Raffinose synthase
           chr05_pseudomolecule_IMGAG_V3 26988896-26984885 E
           EGN_Mt090430 20090702
          Length = 444

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 56/72 (77%)

Query: 422 HNFNLLKTSVLPDGSVLRCQSHALPTRDCLFDDPLHDGKTMLKLWNLNKYIGVLGLFNCQ 481
           H+FNLLK  VLPDGS LR +    PT+DCLF DP  DGK++LK+WN+N Y GV+G+FNCQ
Sbjct: 292 HDFNLLKKLVLPDGSTLRAKLLGRPTKDCLFSDPARDGKSLLKIWNMNDYSGVVGVFNCQ 351

Query: 482 GGGWCCITRRNM 493
           G GWC + ++N+
Sbjct: 352 GAGWCKVGKKNL 363


>IMGA|Medtr7g062070.1 Raffinose synthase
           chr07_pseudomolecule_IMGAG_V3 12609241-12610993 E
           EGN_Mt090430 20090702
          Length = 166

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 126 YDLLLPLIEGSFRSSLQASIEDDDVDICVDSGSSLVTEFSFRSRLYMHVFFDPYRVIKDA 185
           Y +LLPL+EG FR++LQ     ++++ICV+SG   V EF     +++    DPY VI +A
Sbjct: 53  YVVLLPLLEGDFRAALQG----NEIEICVESGCPDVEEFDGTHLVFIGAGSDPYEVITNA 108

Query: 186 VKVVRS 191
           VK V S
Sbjct: 109 VKTVES 114