Jatropha Genome Database

JcCA0297261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297261.10 + phase: 0 /partial
         (72 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g114540.1 Raffinose synthase chr03_pseudomolecule_IMG...   106   3e-24

>IMGA|Medtr3g114540.1 Raffinose synthase
           chr03_pseudomolecule_IMGAG_V3 29013492-29016790 E
           EGN_Mt090430 20090702
          Length = 786

 Score =  106 bits (264), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/72 (63%), Positives = 60/72 (83%)

Query: 1   MLNSGGAIQSLDIDDDKNLVRIGVKGRGEMKVFASEKPVACKLDGVDVQFSYDDQVVVIQ 60
           MLNSGGA+QS++ DD  +LV+IGV+G GEM VFASEKPV CK+DGV V+F Y D++V +Q
Sbjct: 711 MLNSGGAVQSVEFDDHASLVKIGVRGCGEMSVFASEKPVCCKIDGVAVKFDYVDKMVRVQ 770

Query: 61  VPWPNSSRLSAI 72
           +PWP+SS LS +
Sbjct: 771 IPWPSSSTLSLV 782