Jatropha Genome Database

JcCA0297121.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297121.20 - phase: 2 /partial
         (97 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g029700.1 Fumarylacetoacetase; chr02_pseudomolecule_I...   113   2e-26

>IMGA|Medtr2g029700.1 Fumarylacetoacetase;
           chr02_pseudomolecule_IMGAG_V3 7967082-7971788 F
           EGN_Mt090430 20090702
          Length = 421

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 56/63 (88%)

Query: 1   TINGCNLRPGDLLGTGTISGPEPESYGCLLELTWNGQKPLSLNGATRKFLEDGDEVIFSG 60
           TINGCNLRPGD+LGTGTISGPEPES GCLLELTWNGQ  LSLNG  RKFLEDGDEV  +G
Sbjct: 339 TINGCNLRPGDVLGTGTISGPEPESRGCLLELTWNGQNSLSLNGLDRKFLEDGDEVTLTG 398

Query: 61  FSK 63
           +SK
Sbjct: 399 YSK 401