Jatropha Genome Database
- JcCA0297121.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0297121.10 - phase: 0 /partial
(175 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g134000.1 Cyclin-like F-box; chr04_pseudomolecule_IMG... 84 4e-17
IMGA|Medtr2g123270.1 Cyclin-like F-box; chr02_pseudomolecule_IMG... 68 2e-12
IMGA|Medtr4g133940.1 Cyclin-like F-box; chr04_pseudomolecule_IMG... 57 5e-09
IMGA|Medtr2g024470.1 Cyclin-like F-box; Galactose oxidase, centr... 52 1e-07
IMGA|Medtr8g119860.1 Cyclin-like F-box; chr08_pseudomolecule_IMG... 51 3e-07
IMGA|Medtr2g008570.1 Cyclin-like F-box; chr02_pseudomolecule_IMG... 48 2e-06
IMGA|Medtr3g133280.1 Cyclin-like F-box; chr03_pseudomolecule_IMG... 47 5e-06
>IMGA|Medtr4g134000.1 Cyclin-like F-box;
chr04_pseudomolecule_IMGAG_V3 32229345-32228037 F
EGN_Mt090430 20090702
Length = 341
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 25/162 (15%)
Query: 18 QLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLVQ 77
+LIPGLP E+ +ECL ++ H VC+ W+ L + FY R +G++ ++ CLVQ
Sbjct: 6 ELIPGLPSELGLECLTRLSNSSHRVALRVCNQWRRLFLSDEFYSHRKNTGHTRKVACLVQ 65
Query: 78 PLPSLDSIQSLTTTIAIAKKEDKLEHXXXXXXXIHSPPQFGLNIYNATYNTWQKT----E 133
++ H +PP + + +++ +W + E
Sbjct: 66 -------------------AHEQQPHSEFDKQTGSTPPSYDITVFDPESMSWDRVDPVPE 106
Query: 134 FPGKIPMFCQCLAIPSANKLLILGVWDSDTLEPVPDVYILDL 175
+P +P+FCQ + KL+++G WD + EP+ V++ D
Sbjct: 107 YPSGLPLFCQLTSC--EGKLVVMGGWDPASYEPLTAVFVYDF 146
>IMGA|Medtr2g123270.1 Cyclin-like F-box;
chr02_pseudomolecule_IMGAG_V3 29860551-29859041 E
EGN_Mt090430 20090702
Length = 364
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 24/159 (15%)
Query: 18 QLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLVQ 77
+LI LP++IA ECLV+V Q + +V WQ I P F ++R +G++++++ VQ
Sbjct: 2 ELISCLPEDIARECLVRVSYQEFPAVATVSKGWQTEIQTPEFRRVRRSTGHAQKILVTVQ 61
Query: 78 PLPSLDSIQSLTTTIAIAKKEDKLEHXXXXXXXIHSPPQFGLNIYNATYNTWQKT----E 133
DS +S T +A A + P + LN+ W + E
Sbjct: 62 --SKFDSEKSKTGLLAKAT----------------ANPVYNLNVLETETGIWSELPMGPE 103
Query: 134 FPGKIPMFCQCLAIPSANKLLILGVWDSDTLEPVPDVYI 172
+P+FCQ + L+++G WD D+ + V+I
Sbjct: 104 LCEGLPLFCQIAGV--GYDLVVMGGWDPDSWKASNSVFI 140
>IMGA|Medtr4g133940.1 Cyclin-like F-box;
chr04_pseudomolecule_IMGAG_V3 32194624-32189765 E
EGN_Mt090430 20090702
Length = 437
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 3 EEKNSIKNYMGVENQQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQL 62
KNS K V+ L+PGLPD++A+ CL++VP H ++ VC W L+S FY L
Sbjct: 62 RNKNSRKEKTRVQ-PPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLSGNFFYSL 120
Query: 63 RLKSGNSEQLICLVQ 77
R G +E+ + +++
Sbjct: 121 RKSLGMAEEWVYVIK 135
>IMGA|Medtr2g024470.1 Cyclin-like F-box; Galactose oxidase, central;
chr02_pseudomolecule_IMGAG_V3 6203119-6206722 E
EGN_Mt090430 20090702
Length = 405
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 14 VENQQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNP-SFYQLRLKSG 67
+ + LIPGLPD++A+ CL+++P Q HS+ ++VC W L+ N F+ R + G
Sbjct: 47 LREELLIPGLPDDVALNCLLRLPVQSHSSCRAVCKRWHMLLGNKERFFTNRKQMG 101
>IMGA|Medtr8g119860.1 Cyclin-like F-box;
chr08_pseudomolecule_IMGAG_V3 27289161-27291907 E
EGN_Mt090430 20090702
Length = 428
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 19 LIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLVQ 77
L+PGLPD++A+ CL++VP H ++ VC W L+ FY LR +E+ I +++
Sbjct: 67 LLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLIGNFFYSLRKSLRLAEEWIYVIK 125
>IMGA|Medtr2g008570.1 Cyclin-like F-box;
chr02_pseudomolecule_IMGAG_V3 1657223-1654852 E
EGN_Mt090430 20090702
Length = 476
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 40/62 (64%)
Query: 15 ENQQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLIC 74
++ +LIP LPDEI+ + L +VP + N+KSV +W+ +++ + LR + G +E+ +
Sbjct: 39 DDSRLIPSLPDEISAQILARVPRIHYLNLKSVSRAWKAALASSELFCLRKELGTTEEWLY 98
Query: 75 LV 76
++
Sbjct: 99 IL 100
>IMGA|Medtr3g133280.1 Cyclin-like F-box;
chr03_pseudomolecule_IMGAG_V3 33747469-33746429 E
EGN_Mt090430 20090702
Length = 346
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 16 NQQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKS 66
+++LIPGLP+EIA CL+ VP + ++SV SW I+NP + L K+
Sbjct: 14 HEELIPGLPNEIAEICLLHVPYPYQPLVRSVSSSWNRAITNPPSFLLSKKT 64