Jatropha Genome Database

JcCA0296911.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296911.20 - phase: 2 /partial
         (343 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g009560.1 Ribosomal protein L34e chr07_pseudomolecule...   158   4e-39
IMGA|Medtr5g043980.1 Ribosomal protein L34e chr05_pseudomolecule...   134   4e-32
IMGA|Medtr4g158140.1 Ribosomal protein L34e chr04_pseudomolecule...    87   9e-18
IMGA|Medtr6g028420.1 Ribosomal protein L34e chr06_pseudomolecule...    85   4e-17

>IMGA|Medtr7g009560.1 Ribosomal protein L34e
           chr07_pseudomolecule_IMGAG_V3 1757709-1751027 E
           EGN_Mt090430 20090702
          Length = 793

 Score =  158 bits (399), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 174/329 (52%), Gaps = 24/329 (7%)

Query: 33  FYNKYAERMRWFDVLNYERTCGISTILNKQIGTPNSFESIEDEDFSVSPYM-----SWDK 87
           FY  Y ERMR FD+LNY++   +   L K      SF   +    +++  +     S+ +
Sbjct: 469 FYRSYRERMRKFDILNYQKMYALG--LMKSKDPLKSFSIHKKSSSTITCILPRGINSFFR 526

Query: 88  RAR-------KRLLRSIESDFELVYVAQSCLSWEALHHQYRKVEALAI-TTSQNGIFS-H 138
           R R       K+ +R + SD E+VYV   CLSWE LH +Y K  AL I  + Q G+   +
Sbjct: 527 RNRNIDADPMKKFIRELYSDLEMVYVGHLCLSWEFLHWEYEK--ALKIWESDQYGLRRFN 584

Query: 139 HVAEELQKFKVLLERFMEDERFEGKRVWNYVRGRFSFKSLLQVPKVSGFFEQAKEE---- 194
            VA E Q+F+VLL+RF+E+E F+G RV NY R R + K LLQVP +     + K++    
Sbjct: 585 EVAGEFQQFQVLLQRFIENEPFQGPRVENYARNRCAMKKLLQVPVIKEDKGKDKKKYRKR 644

Query: 195 -MKIEGINVKEVLKAIERCILVFWVFVKIDNKKSWWKFRSSLWTYPPVEDPRDLKLLVDL 253
            +  + I    +++ +E  I   W F++ D   S    +     +  ++DP D +LLV++
Sbjct: 645 EVDNDAITSDMLVEILEESIRTIWRFIRGDEDASNLTIKCLKEQHVELQDPADSQLLVEI 704

Query: 254 TRNLQKKELWLKDSQGKQRCWFRKVVKPLEESQRKDLLFTMIDIKLVSRVLQLSVISSTQ 313
             +LQKKE  L++      C  +K  K  +E+      F+ +D+KLV RVL +S I++ Q
Sbjct: 705 LTDLQKKEKRLREVLRSGSCILKKFKKHEDETDPVLYFFSQVDLKLVCRVLNMSRITTDQ 764

Query: 314 LKWCQEKLDNIEFKEGKIVRACSSGPLFP 342
           L WC+ KL+ I F   +I     S  LFP
Sbjct: 765 LAWCRSKLNKINFVNRRI-HVEPSFLLFP 792


>IMGA|Medtr5g043980.1 Ribosomal protein L34e
           chr05_pseudomolecule_IMGAG_V3 18212106-18206550 E
           EGN_Mt090430 20090702
          Length = 909

 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 171/343 (49%), Gaps = 21/343 (6%)

Query: 12  ESPAMELEVSKIGFEDQ--DFDAFYNKYAERMRWFDVLNYERTCGISTILNKQIGTPNSF 69
           E   +++EV K+ F+DQ    +  Y  YAE+MR  D+LNY+    +  +   Q+  P   
Sbjct: 575 ELKPLKIEV-KLEFKDQMDQIEKVYKSYAEKMRKLDILNYQTMHALGLL---QLKDPLKL 630

Query: 70  ESIEDEDFS--VSPYMSWDKRARK-------RLLRSIESDFELVYVAQSCLSWEALHHQY 120
            SI     S  +     W +++ K       +L+  +  D ELVYV Q CLSWE L   +
Sbjct: 631 ISIPKSTISNGIISQNLWPRKSTKITSDPFLKLVHQLHRDLELVYVGQICLSWEILCWLH 690

Query: 121 RKVEALAITTSQNGIFSHHVAEELQKFKVLLERFMEDERFEGK-RVWNYVRGRFSFKSLL 179
            K   L    SQ     +HVA E Q F+VL++RF+E+E F+G  R+ NYV+ R   ++LL
Sbjct: 691 MKAIELQQYDSQRSHRYNHVAGEFQLFQVLMQRFIENEPFQGGPRIQNYVKNRCVIRNLL 750

Query: 180 QVPKVSGFFEQAKEEMKIEGINVKEVLKAIERCILVFWVFVKIDNKKSWWKFRSSLWTYP 239
            VP +     +  EE  I    +++++K   R   VFW FV+ D         S      
Sbjct: 751 HVPAIKDDI-KGGEEDPIASGRLQDIIKESMR---VFWEFVRTDKDNGNVNVISK-QIGS 805

Query: 240 PVEDPRDLKLLVDLTRNLQKKELWLKDSQGKQRCWFRKVVKPLEESQRKDLLFTMIDIKL 299
            ++DP    LLVD+   LQKK+  LKD      C  +K  K  E+    + L   + ++L
Sbjct: 806 DLKDPAIANLLVDIRIQLQKKDKKLKDIVRTGNCIVKKFQKHHEDQLDHEQLVAQVGLRL 865

Query: 300 VSRVLQLSVISSTQLKWCQEKLDNIEFKEGKIVRACSSGPLFP 342
           +SRV+ +S +   Q+ WC EKL+ I+F   KIV    S  LFP
Sbjct: 866 ISRVINMSQLRKEQVLWCSEKLNRIKFLSRKIVHVEPSFLLFP 908


>IMGA|Medtr4g158140.1 Ribosomal protein L34e
           chr04_pseudomolecule_IMGAG_V3 39610795-39609425 H
           EGN_Mt090430 20090702
          Length = 272

 Score = 87.4 bits (215), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 134/254 (52%), Gaps = 22/254 (8%)

Query: 99  SDFELVYVAQSCLSWEALHHQYRKVEALAITTSQNGI---FSHHVAEELQKFKVLLERFM 155
           S+ E  YVAQ CL+WEAL   Y        + S++         +A++ Q+F+VLL+R++
Sbjct: 30  SELEAAYVAQICLTWEALSWNYTNFRYKHASQSRHDFDIGCPATIAQQFQQFQVLLQRYV 89

Query: 156 EDERFE-GKRVWNYVRGRFSFKSLLQVPKVSGFFEQAKEEMKIEG-INVKEVLKAIERCI 213
           E+E +E G+R   Y R R     LL VP+   + E+ + +      I+    LK +E  I
Sbjct: 90  ENEPYEHGRRPEIYARMRLLAPKLLLVPE---YHEEDQMDSDFHSKISSASFLKIMEGGI 146

Query: 214 LVFWVFVKIDNKKSW----WKFRSSLWTYPPVEDPRDLKLLVDLTRNLQKKELWLKDSQG 269
             F  F+K D +KS     + FR +      + DP  LKL+  +    QKK + +KD   
Sbjct: 147 RTFMNFLKTDKEKSCQILTYYFRRNKRG---MVDPTLLKLMKKVN---QKKRVKVKDLSH 200

Query: 270 KQRCWFRKVVKPLEESQRKDLLFTMIDIKLVSRVLQLSVISSTQLKWCQEKLDNIEFKEG 329
             +   ++ +K  EE +   +L  +ID+K+VSRVL++  +S  QL WC++K+  +   EG
Sbjct: 201 LGKGLRKRKLKVEEEIE---ILMGLIDLKVVSRVLRMKELSEQQLHWCEKKMSKVRVVEG 257

Query: 330 KIVRACSSGPLFPP 343
           K+ R  S+ PLF P
Sbjct: 258 KLCRDYST-PLFFP 270


>IMGA|Medtr6g028420.1 Ribosomal protein L34e
           chr06_pseudomolecule_IMGAG_V3 6470468-6474527 E
           EGN_Mt090430 20090702
          Length = 600

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 128/251 (50%), Gaps = 24/251 (9%)

Query: 100 DFELVYVAQSCLSWEALHHQYRKVEALAITTSQNGIFSHHVAEELQKFKVLLERFMEDER 159
           + E  YVAQ CL+WEAL+  Y+  +    +    G  +  +A++ Q+F+VLL+R++E+E 
Sbjct: 365 ELEGAYVAQICLTWEALNWNYKNFQTKRASNVDVGCPAT-IAQQFQQFQVLLQRYVENEP 423

Query: 160 FE-GKRVWNYVRGRFSFKSLLQVPKVSGFFEQAKEEMKIEGINVK----EVLKAIERCIL 214
           +E G+R   Y R R     LL VP+     +  KE +   G N K      L  +E  I 
Sbjct: 424 YEFGRRPEIYARMRHMAPKLLLVPEYRESDDDQKENI---GFNTKISSASFLVIMEDGIR 480

Query: 215 VFWVFVKIDNKKSWWKFRSSLWTYPPVEDPRDLKLLVDLTRNLQKKELWLK--DSQGKQR 272
            F  F+K D +K      S           R+ + LVD T     K+  +K  D +   +
Sbjct: 481 TFMNFLKADKEKPCQILASYFR--------RNQRGLVDPTLIRLLKKKKIKIKDLRRSHK 532

Query: 273 CWFRKVVKPLEESQRKDLLFTMIDIKLVSRVLQLSVISSTQLKWCQEKLDNIEFKEGKIV 332
           C  ++ +K  EE +   +L  +ID+KLVSRVL++S ++  QL WC+EK   +   +GK+ 
Sbjct: 533 CLRKRNLKEEEEME---ILMALIDLKLVSRVLRMSDMNENQLHWCEEKNSKVRVIDGKLQ 589

Query: 333 RACSSGPLFPP 343
           R   S PLF P
Sbjct: 590 R--DSTPLFFP 598