Jatropha Genome Database

JcCA0296871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296871.10 + phase: 0 /partial
         (255 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g093180.1 ELK; KNOX1; KNOX2; Homeodomain-related chr0...   126   1e-29
IMGA|Medtr5g035050.1 ELK; KNOX1; KNOX2; Homeodomain-related chr0...   105   3e-23
IMGA|Medtr1g100630.1 KNOX1; KNOX2 chr01_pseudomolecule_IMGAG_V3 ...    85   3e-17
IMGA|Medtr6g080690.1 KNOX1; KNOX2 chr06_pseudomolecule_IMGAG_V3 ...    52   2e-07
IMGA|Medtr3g137900.2 ELK; KNOX1; KNOX2; Homeodomain-related chr0...    50   2e-06
IMGA|Medtr3g137900.1 ELK; KNOX1; KNOX2; Homeodomain-related chr0...    49   2e-06

>IMGA|Medtr5g093180.1 ELK; KNOX1; KNOX2; Homeodomain-related
           chr05_pseudomolecule_IMGAG_V3 36623468-36619750 F
           EGN_Mt090430 20090702
          Length = 312

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 73/106 (68%), Gaps = 6/106 (5%)

Query: 111 KAKIMAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXXMGPTGTS------CVGED 164
           + KIMAHP + RLL++Y+NC KVGAPPEVV            +  +         C+GED
Sbjct: 61  RDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCEILNGSSGRTGSSSSCIGED 120

Query: 165 PALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKALTVSS 210
           P LDQFMEAYCEML KYEQEL+KPFKEAMLFL R+E Q KA+ VS+
Sbjct: 121 PGLDQFMEAYCEMLIKYEQELTKPFKEAMLFLSRIESQLKAVAVST 166


>IMGA|Medtr5g035050.1 ELK; KNOX1; KNOX2; Homeodomain-related
           chr05_pseudomolecule_IMGAG_V3 14425093-14433603 E
           EGN_Mt090430 20090702
          Length = 316

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 2/106 (1%)

Query: 103 NDGSAASVKAKIMAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXX--XMGPTGTSC 160
           +D ++  +KAKI +HP+Y RLL AYI+CQKVGAPPE+                    ++C
Sbjct: 65  DDVASNIMKAKIASHPYYPRLLQAYIDCQKVGAPPEIASLLEEIRRENDMCKRDVVVSTC 124

Query: 161 VGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKAL 206
            G DP LD+FME+YC+ML KY+ +L++PF EA  FL ++E Q   L
Sbjct: 125 FGADPELDEFMESYCDMLVKYKSDLTRPFDEATTFLNKIETQLSHL 170


>IMGA|Medtr1g100630.1 KNOX1; KNOX2 chr01_pseudomolecule_IMGAG_V3
           20957714-20955646 E EGN_Mt090430 20090702
          Length = 242

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 110 VKAKIMAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXXMGPTGTSCVGEDPALDQ 169
           +K +I  HP Y  LL+A++ CQKVGAP E+                     +G+DP LD 
Sbjct: 102 IKNQIATHPLYPNLLSAFLECQKVGAPTELASLLEEIGRESHP--NNAFREIGDDPDLDH 159

Query: 170 FMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKAL 206
           FME+YCE+L +Y++ELSKP  EA LFL  +E Q   L
Sbjct: 160 FMESYCEVLHRYKEELSKPLNEATLFLCNIESQLNEL 196


>IMGA|Medtr6g080690.1 KNOX1; KNOX2 chr06_pseudomolecule_IMGAG_V3
           16224666-16220748 E EGN_Mt090430 20090702
          Length = 161

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 6/128 (4%)

Query: 101 DSNDGSAASVKAKIMAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXXMGPTGTSC 160
           D  + +   +K +I  HP Y  L+ A+++C KVG   ++             +       
Sbjct: 33  DHQEENDEILKTRISNHPLYELLVQAHLDCLKVG---DISNLEIEKSDKKQTLKKQNLDM 89

Query: 161 VGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKALT--VSSPNSGDNNL 218
           + +   LD FMEAYC  L+K ++ + +P + +M F+  +  Q + LT   SS +  D   
Sbjct: 90  LSQ-SELDLFMEAYCLALSKLKEAMKEPQQNSMAFINNMHSQLRELTQATSSSSEPDATT 148

Query: 219 SLSHCLMR 226
           S S C  R
Sbjct: 149 SSSECTFR 156


>IMGA|Medtr3g137900.2 ELK; KNOX1; KNOX2; Homeodomain-related
           chr03_pseudomolecule_IMGAG_V3 35070779-35066452 E
           EGN_Mt090430 20090702
          Length = 371

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 11/118 (9%)

Query: 108 ASVKAKIMAHPHYHRLLAAYINCQKVGAP----PEV---VXXXXXXXXXXXXMGPTGTSC 160
           A  K +IMAHP Y +LL+A+++C ++  P    P +   +            +G  G   
Sbjct: 104 AKHKGEIMAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAESQNVVAKYSALGQQGMLD 163

Query: 161 VGEDPALDQFMEAYCEMLTKYEQELSKPFK----EAMLFLQRVECQFKALTVSSPNSG 214
             ++  LD FM  Y  +L  ++++L +  +    EA++    +E   ++LT  SP  G
Sbjct: 164 NDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEG 221


>IMGA|Medtr3g137900.1 ELK; KNOX1; KNOX2; Homeodomain-related
           chr03_pseudomolecule_IMGAG_V3 35070779-35066452 E
           EGN_Mt090430 20090702
          Length = 373

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 11/118 (9%)

Query: 108 ASVKAKIMAHPHYHRLLAAYINCQKVGAP----PEV---VXXXXXXXXXXXXMGPTGTSC 160
           A  K +IMAHP Y +LL+A+++C ++  P    P +   +            +G  G   
Sbjct: 104 AKHKGEIMAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAESQNVVAKYSALGQQGMLD 163

Query: 161 VGEDPALDQFMEAYCEMLTKYEQELSKPFK----EAMLFLQRVECQFKALTVSSPNSG 214
             ++  LD FM  Y  +L  ++++L +  +    EA++    +E   ++LT  SP  G
Sbjct: 164 NDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEG 221