Jatropha Genome Database

JcCA0296711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296711.20 + phase: 0 /pseudo/partial
         (313 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g125120.1 Cytochrome cd1-nitrite reductase-like, C-te...   209   2e-54
IMGA|Medtr4g125130.1 WD repeat-containing protein 79, related ch...   148   3e-36
IMGA|Medtr4g125140.1 WD-40 repeat chr04_pseudomolecule_IMGAG_V3 ...   105   3e-23

>IMGA|Medtr4g125120.1 Cytochrome cd1-nitrite reductase-like,
           C-terminal haem d1, putative
           chr04_pseudomolecule_IMGAG_V3 29444563-29437786 E
           EGN_Mt090430 20090702
          Length = 1003

 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 92/118 (77%), Positives = 107/118 (90%)

Query: 179 KIFAGYNKSVRVFDIHRPGRDFEQYSTLQGNKEGQTGIISAIAVSPTRSGMLATGSYSQT 238
           KIFAGYNK +R+FD+HRPGRDF+ +ST++  KEGQTGIISA+A SP+ +GMLA GSYSQT
Sbjct: 763 KIFAGYNKCIRMFDLHRPGRDFKLHSTVKDKKEGQTGIISALAFSPSHTGMLALGSYSQT 822

Query: 239 AAIFREDNMELLYVLHGQEGGITHVQFSKDGNYLYTGGRKDPYILCWDLRKTVEVVYK 296
            AI+ EDNMELLYVLHGQEGG+THVQFS+DGNYLYTGGRKDPYILCWD+RK V+ VYK
Sbjct: 823 TAIYTEDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDVRKAVDCVYK 880


>IMGA|Medtr4g125130.1 WD repeat-containing protein 79, related
           chr04_pseudomolecule_IMGAG_V3 29446856-29445521 E
           EGN_Mt090430 20090702
          Length = 86

 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 78/81 (96%)

Query: 99  EDSYDASLVVNEGESVYDFCWYPYMTASEPVSCVFASTTRDHPIHLWDASSGLLRCTYRA 158
           +DSY ASLV++EGES++DFCWYPYM+AS+PV+ VFA+TTRDHPIHLWDA+SG LRCTYRA
Sbjct: 6   QDSYAASLVMSEGESIHDFCWYPYMSASDPVTNVFATTTRDHPIHLWDATSGQLRCTYRA 65

Query: 159 YDAVDEITAAFSIAFNPAGTK 179
           YDA+DEITAAFS+AFNP+GTK
Sbjct: 66  YDAMDEITAAFSVAFNPSGTK 86


>IMGA|Medtr4g125140.1 WD-40 repeat chr04_pseudomolecule_IMGAG_V3
           29448049-29447564 E EGN_Mt090430 20090702
          Length = 103

 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 75/108 (69%), Gaps = 9/108 (8%)

Query: 1   MGEGEQQEAMEVATETTQSIE-QDYSWPLIRFDLPPRRIHHFYKQFRTSSNANNFLKGVK 59
           MGE E +E +E+  + +   E ++YSWP++RFD+ P R +HF++QF + +N NNFLK VK
Sbjct: 1   MGE-EAEEVIELQPDASIPNEIEEYSWPVLRFDVSPHRTYHFHQQFTSPTNPNNFLKAVK 59

Query: 60  WSPDGSCFLTSTEDNTLRLFSLPDDGSGSDSNACSINVDEDSYDASLV 107
           WSPDGS FLTS++DNTLRLF+LP    G+DS+   I +D   Y   L 
Sbjct: 60  WSPDGSSFLTSSDDNTLRLFTLP----GADSD---IPLDTSDYQGKLT 100