Jatropha Genome Database

JcCA0296331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296331.10 + phase: 0 /partial
         (197 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g024730.1 Glycoside hydrolase, family 47 chr02_pseudo...   331   2e-91
IMGA|Medtr8g129820.1 Glycoside hydrolase, family 47 chr08_pseudo...   123   5e-29
IMGA|Medtr8g125210.1 Glycoside hydrolase, family 47 chr08_pseudo...    82   1e-16
IMGA|Medtr1g117710.1 Glycoside hydrolase, family 47 chr01_pseudo...    72   1e-13

>IMGA|Medtr2g024730.1 Glycoside hydrolase, family 47
           chr02_pseudomolecule_IMGAG_V3 6358264-6364041 F
           EGN_Mt090430 20090702
          Length = 631

 Score =  331 bits (848), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 155/195 (79%), Positives = 176/195 (90%)

Query: 1   VCFLPGTLALGATKGITKEKAMKANLLKFEDLENLKLAEDLAKTCFEMYSVTSTGLAPEI 60
           VCFL GTLALGATKG+TK++AM+ N+L FEDLENLKLAEDLAKTCFEMYSVTSTGLAPEI
Sbjct: 434 VCFLSGTLALGATKGLTKKQAMENNMLNFEDLENLKLAEDLAKTCFEMYSVTSTGLAPEI 493

Query: 61  AYFHTKEYSEAGLNGGNKSSKFXXXXXXKHADRHNLLRPETVESLFVLYRITQDPKYREW 120
           AYFHT+E+SE G +GGNKSS++      + ADRHNLLRPETVES FVLYRIT+D KYREW
Sbjct: 494 AYFHTEEFSEQGHDGGNKSSEYINDIIIRPADRHNLLRPETVESFFVLYRITEDLKYREW 553

Query: 121 GWQIFEAFEKYTKVESAGYSSLEDVTMLPPRRRDKMETFYLGETLKYLYLLFGDTNIIPL 180
           GWQIFEAFEKYTK+++ GYSSL+DVT++PP RRDKMETF+LGETLKYLYLLFGD++ IPL
Sbjct: 554 GWQIFEAFEKYTKIDTGGYSSLDDVTIIPPPRRDKMETFFLGETLKYLYLLFGDSSHIPL 613

Query: 181 DKFVFNTEAHPFPIK 195
           DKFVFNTEAHP PI 
Sbjct: 614 DKFVFNTEAHPIPIN 628


>IMGA|Medtr8g129820.1 Glycoside hydrolase, family 47
           chr08_pseudomolecule_IMGAG_V3 30803180-30804336 H
           EGN_Mt090430 20090702
          Length = 172

 Score =  123 bits (309), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 91/160 (56%), Gaps = 22/160 (13%)

Query: 35  LKLAEDLAKTCFEMYSVTSTGLAPEIAYFHTKEYSEAGLNGGNKSSKFXXXXXXKHADRH 94
           + L   LA TC+  Y  T T LA E  YF   E    G +                    
Sbjct: 2   VHLIVQLAWTCYNFYQSTPTKLAGENYYFRKDEDMNVGTSW------------------- 42

Query: 95  NLLRPETVESLFVLYRITQDPKYREWGWQIFEAFEKYTKVESAGYSSLEDVTMLPPRRRD 154
           N+ RPET+ESLF L+R T++  Y+EWGW IF+AFEK ++ E+ GY  L DV      + D
Sbjct: 43  NIQRPETIESLFYLWRFTRNKTYQEWGWNIFQAFEKNSRTET-GYVGLRDVNT--GDKDD 99

Query: 155 KMETFYLGETLKYLYLLFGDTNIIPLDKFVFNTEAHPFPI 194
            M++F+L ETLKYLYLLF   ++I LD++VFNTEAHP  I
Sbjct: 100 MMQSFFLAETLKYLYLLFSPPSVISLDEWVFNTEAHPLRI 139


>IMGA|Medtr8g125210.1 Glycoside hydrolase, family 47
           chr08_pseudomolecule_IMGAG_V3 29124851-29129719 E
           EGN_Mt090430 20090702
          Length = 570

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 4/101 (3%)

Query: 97  LRPETVESLFVLYRITQDPKYREWGWQIFEAFEKYTKVESAGYSSLEDVTMLPPRRRDKM 156
           LRPE  ES F LY+ T+DP Y E G  I  +   +T+VE  G++S++DVT +  +  D  
Sbjct: 385 LRPEFAESTFYLYQATKDPWYIEVGELIVNSLNLHTRVE-GGFASIKDVTTM--QLEDHQ 441

Query: 157 ETFYLGETLKYLYLLFGDTNIIPLDKFVFNTEAHPFPIKGT 197
            +F+L ET KYLYLLF D+ ++    +VF TE HP P+  T
Sbjct: 442 HSFFLAETCKYLYLLFDDSFMVD-SNYVFTTEGHPLPVLST 481


>IMGA|Medtr1g117710.1 Glycoside hydrolase, family 47
           chr01_pseudomolecule_IMGAG_V3 25330629-25326678 E
           EGN_Mt090430 20090702
          Length = 272

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 9/111 (8%)

Query: 89  KHADRHNLLRPETVESLFVLYRITQDPKYREWGWQIFEAFEKYTKVESAGYSSLEDVTML 148
           +H  +   LRPE +ES + LY+ T+DP+Y + G  +  + +  T+    GY  + DV   
Sbjct: 21  QHGQKSYPLRPELIESTYWLYKATRDPRYLDAGRDMLASLQYGTRC-PCGYCHISDVE-- 77

Query: 149 PPRRRDKMETFYLGETLKYLYLLF----GDTNIIPLD--KFVFNTEAHPFP 193
             R+ D ME+F+L ET+KYL+LLF    G  N++     K+VF+TE H  P
Sbjct: 78  DHRQEDHMESFFLAETVKYLWLLFDLAVGPDNLVENGPYKYVFSTEGHLLP 128