Jatropha Genome Database

JcCA0296141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296141.20 - phase: 2 /TE
         (570 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g058900.1 Zinc finger, CCHC-type chr03_pseudomolecule...    65   1e-10
IMGA|Medtr8g074430.1 integrase, related chr08_pseudomolecule_IMG...    57   3e-08

>IMGA|Medtr3g058900.1 Zinc finger, CCHC-type
           chr03_pseudomolecule_IMGAG_V3 13082612-13083121 H
           EGN_Mt090430 20090702
          Length = 169

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 21/166 (12%)

Query: 123 MKTSGGVKEYVNNFMSIVNKIRLLGEEFPERRVVEKILISLSEKFESKISSLEHTKNLSE 182
           MK    +K+Y ++ ++I  ++++ GE   ++ V+EKIL +L  +F+  + ++E TK+L+E
Sbjct: 1   MKKEDKIKDYFSSVLTITKQMKICGETLFDKSVMEKILRTLPSQFDHLVITIEETKDLNE 60

Query: 183 ISVGELTNALQAVEQRRAFR-EDNTIEAAFVAK-----------------TTNKFLSKRR 224
             + EL  AL+A E +   R E+   E + +A+                    K   K  
Sbjct: 61  AKIEELQGALEAHEMKVTSRKEEKDEEQSLLARFKQEESMKEYWKKKKGKNHQKHGDKPE 120

Query: 225 KFPLCGICKKDNHNENDCWHKGKLQCFNCKKFGHIQKDCRYKNQSN 270
                G   K + N+   ++K  +QCFNC+K+GH   +C +    N
Sbjct: 121 SLKSGG---KSSKNQGKKFNKKNVQCFNCEKYGHYASECWFNKDRN 163


>IMGA|Medtr8g074430.1 integrase, related
           chr08_pseudomolecule_IMGAG_V3 14788217-14787399 H
           EGN_Mt090430 20090702
          Length = 272

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 56/95 (58%)

Query: 80  FTSIMTYETAKEIWDSLKNEYQSNEQTKLMQVLNLKREFEMQKMKTSGGVKEYVNNFMSI 139
           F+++M  ETA+E+W++L+N ++   + K+ ++  L  E+E   MK    + +    F  +
Sbjct: 98  FSNVMYCETAREMWNTLQNIHEGTGEVKMARIGYLTGEYERFCMKPGENIHDMQMRFYDV 157

Query: 140 VNKIRLLGEEFPERRVVEKILISLSEKFESKISSL 174
           VN +  LG++ P   +V K+L  LS+K+  K+ ++
Sbjct: 158 VNHLASLGKKIPNEDLVSKVLRCLSKKWRHKVRAI 192