Jatropha Genome Database

JcCA0295991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0295991.10 - phase: 0 /partial
         (165 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g046110.1 Chorismate mutase chr05_pseudomolecule_IMGA...   118   1e-27
IMGA|Medtr1g016760.1 Chorismate mutase chr01_pseudomolecule_IMGA...    75   2e-14
IMGA|Medtr1g016760.2 Chorismate mutase chr01_pseudomolecule_IMGA...    75   2e-14
IMGA|Medtr3g138290.1 Chorismate mutase chr03_pseudomolecule_IMGA...    57   4e-09

>IMGA|Medtr5g046110.1 Chorismate mutase
           chr05_pseudomolecule_IMGAG_V3 19359456-19356973 H
           EGN_Mt090430 20090702
          Length = 174

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 65/77 (84%), Gaps = 1/77 (1%)

Query: 66  KKRVDESENLTLEHIRRSLIRQEDSIIFSLLERSQYCYNADTYDPDAFSMDGFHGSLVEY 125
           K RVDES +LTL+ IR SLIRQEDSIIF+LLER+QY YNADTYD  AF  DGFHGSLVEY
Sbjct: 8   KTRVDESRSLTLDCIRHSLIRQEDSIIFNLLERAQYSYNADTYD-KAFFSDGFHGSLVEY 66

Query: 126 MLREIEKLHAQVGRYKS 142
           M+ E EKLHAQVGRY S
Sbjct: 67  MVHETEKLHAQVGRYTS 83


>IMGA|Medtr1g016760.1 Chorismate mutase
           chr01_pseudomolecule_IMGAG_V3 3312830-3316332 E
           EGN_Mt090430 20090702
          Length = 254

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 49/67 (73%)

Query: 76  TLEHIRRSLIRQEDSIIFSLLERSQYCYNADTYDPDAFSMDGFHGSLVEYMLREIEKLHA 135
           TL+ +R +L+RQED+I+F L+ERS++ +N+ TYD +   + GF GSLVE++    E + A
Sbjct: 9   TLDTVRETLVRQEDTIVFGLIERSKFPFNSQTYDQNYLQIPGFCGSLVEFVFTNTEIVQA 68

Query: 136 QVGRYKS 142
           + GRYK+
Sbjct: 69  KAGRYKN 75


>IMGA|Medtr1g016760.2 Chorismate mutase
           chr01_pseudomolecule_IMGAG_V3 3312830-3316332 E
           EGN_Mt090430 20090702
          Length = 178

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 49/67 (73%)

Query: 76  TLEHIRRSLIRQEDSIIFSLLERSQYCYNADTYDPDAFSMDGFHGSLVEYMLREIEKLHA 135
           TL+ +R +L+RQED+I+F L+ERS++ +N+ TYD +   + GF GSLVE++    E + A
Sbjct: 9   TLDTVRETLVRQEDTIVFGLIERSKFPFNSQTYDQNYLQIPGFCGSLVEFVFTNTEIVQA 68

Query: 136 QVGRYKS 142
           + GRYK+
Sbjct: 69  KAGRYKN 75


>IMGA|Medtr3g138290.1 Chorismate mutase
           chr03_pseudomolecule_IMGAG_V3 35346533-35347026 E
           EGN_Mt090430 20090702
          Length = 100

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 1/93 (1%)

Query: 50  RILSVEASASSIGLEKKKRVDESEN-LTLEHIRRSLIRQEDSIIFSLLERSQYCYNADTY 108
           R ++V     S     K     SEN  T+E +R SLIRQED+IIFS++ER+++  N+ TY
Sbjct: 5   RFMAVVVMLLSCTERHKSTAKGSENEYTVESVRASLIRQEDTIIFSVIERARFPLNSPTY 64

Query: 109 DPDAFSMDGFHGSLVEYMLREIEKLHAQVGRYK 141
                S+  F GSL++ +L   E + A+V +++
Sbjct: 65  HQHYASIPHFSGSLLDVVLDYTEAIQAKVEQHE 97