Jatropha Genome Database

JcCA0294381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294381.10 + phase: 0 /partial
         (109 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g023980.1 Plant regulator RWP-RK chr05_pseudomolecule...    83   3e-17

>IMGA|Medtr5g023980.1 Plant regulator RWP-RK
           chr05_pseudomolecule_IMGAG_V3 9497574-9494159 E
           EGN_Mt090430 20090702
          Length = 330

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%)

Query: 1   MLGRFKVMELFEGQVIGLWQCMFAFHADXXXXXXXXXXXXXXXRNPKLKSIPTLANDLQL 60
           +L  F   E+FEG   G+W C+FAFHA                RNPKL++IP L NDL +
Sbjct: 59  LLKSFVCEEIFEGYKNGVWLCVFAFHAYNVPQFSHIPTFLLVTRNPKLQAIPNLLNDLHM 118

Query: 61  IFKLSSRTADGESLQFLSKGKCERARGDCCQSKKSLPVLDQDLNCLPYS 109
           I+KL  +     + +  +  + +    D    KK LPVL+QDLNCLPY 
Sbjct: 119 IYKLEPKKEQKSTPESSASEELKGNNNDFQPPKKVLPVLNQDLNCLPYE 167