Jatropha Genome Database

JcCA0294271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294271.10 + phase: 1 /pseudo/partial
         (229 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g073580.1 DAHP synthetase, class II chr05_pseudomolec...   281   1e-76
IMGA|Medtr5g073580.2 DAHP synthetase, class II chr05_pseudomolec...   281   2e-76
IMGA|Medtr2g009150.1 DAHP synthetase, class II chr02_pseudomolec...   261   2e-70

>IMGA|Medtr5g073580.1 DAHP synthetase, class II
           chr05_pseudomolecule_IMGAG_V3 26473461-26477980 E
           EGN_Mt090430 20090702
          Length = 532

 Score =  281 bits (720), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/150 (88%), Positives = 142/150 (94%)

Query: 80  KWSVDSWKSKKALQLPEYPSKEDLETVLKTLEAFPPIVFAGEARSLEEKLAEAAMGNAFL 139
           KW++DSWKSKKALQLPEYPS+EDLE VLKTL+AFPPIVFAGEAR+LEE L EAAMGNAFL
Sbjct: 76  KWTIDSWKSKKALQLPEYPSQEDLEAVLKTLDAFPPIVFAGEARTLEEHLGEAAMGNAFL 135

Query: 140 LQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKVGRMAGQFAKPRSEPFEE 199
           LQGGDCAESFKEFNANNIRDTFRI+LQM  V+MFGGQMPVIKVGRMAGQFAKPRS+ FEE
Sbjct: 136 LQGGDCAESFKEFNANNIRDTFRIILQMSVVMMFGGQMPVIKVGRMAGQFAKPRSDNFEE 195

Query: 200 KNGVKLPSYRGDNINGDAVNEKSRVPDPER 229
           KNGVKLPSYRGDNINGDA +EKSR PDP+R
Sbjct: 196 KNGVKLPSYRGDNINGDAFDEKSRTPDPQR 225


>IMGA|Medtr5g073580.2 DAHP synthetase, class II
           chr05_pseudomolecule_IMGAG_V3 26473461-26476835 E
           EGN_Mt090430 20090702
          Length = 454

 Score =  281 bits (718), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 132/150 (88%), Positives = 142/150 (94%)

Query: 80  KWSVDSWKSKKALQLPEYPSKEDLETVLKTLEAFPPIVFAGEARSLEEKLAEAAMGNAFL 139
           KW++DSWKSKKALQLPEYPS+EDLE VLKTL+AFPPIVFAGEAR+LEE L EAAMGNAFL
Sbjct: 76  KWTIDSWKSKKALQLPEYPSQEDLEAVLKTLDAFPPIVFAGEARTLEEHLGEAAMGNAFL 135

Query: 140 LQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKVGRMAGQFAKPRSEPFEE 199
           LQGGDCAESFKEFNANNIRDTFRI+LQM  V+MFGGQMPVIKVGRMAGQFAKPRS+ FEE
Sbjct: 136 LQGGDCAESFKEFNANNIRDTFRIILQMSVVMMFGGQMPVIKVGRMAGQFAKPRSDNFEE 195

Query: 200 KNGVKLPSYRGDNINGDAVNEKSRVPDPER 229
           KNGVKLPSYRGDNINGDA +EKSR PDP+R
Sbjct: 196 KNGVKLPSYRGDNINGDAFDEKSRTPDPQR 225


>IMGA|Medtr2g009150.1 DAHP synthetase, class II
           chr02_pseudomolecule_IMGAG_V3 1948320-1942930 E
           EGN_Mt090430 20090702
          Length = 510

 Score =  261 bits (668), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 117/149 (78%), Positives = 137/149 (91%)

Query: 81  WSVDSWKSKKALQLPEYPSKEDLETVLKTLEAFPPIVFAGEARSLEEKLAEAAMGNAFLL 140
           W++DSW+ KKALQLPEYP +E L+ VL+TL +FPPIVFAGEAR+LE+KL++A+MGNAFLL
Sbjct: 54  WNIDSWRKKKALQLPEYPDQEQLDEVLQTLSSFPPIVFAGEARNLEDKLSQASMGNAFLL 113

Query: 141 QGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKVGRMAGQFAKPRSEPFEEK 200
            GGDCAESFKEF+ANNIRDTFR++LQMG VLMFG QMPVIKVGRMAGQFAKPRS+ FEEK
Sbjct: 114 MGGDCAESFKEFSANNIRDTFRVILQMGVVLMFGAQMPVIKVGRMAGQFAKPRSDSFEEK 173

Query: 201 NGVKLPSYRGDNINGDAVNEKSRVPDPER 229
           NGVKLPSYRGDN+NGDA +  SR+PDP+R
Sbjct: 174 NGVKLPSYRGDNVNGDAFDAASRIPDPQR 202