Jatropha Genome Database

JcCA0294231.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294231.20 - phase: 1 /partial
         (259 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g150290.1 Glycoside hydrolase, catalytic core chr03_p...    98   4e-21
IMGA|Medtr4g160980.1 Alpha amylase, catalytic region; ; chr04_ps...    97   7e-21

>IMGA|Medtr3g150290.1 Glycoside hydrolase, catalytic core
           chr03_pseudomolecule_IMGAG_V3 39561825-39558471 E
           EGN_Mt090430 20090702
          Length = 213

 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 97/199 (48%), Gaps = 18/199 (9%)

Query: 62  TNKIPVLERRLKQIRNYLFILYVSLGVPVLNMGDECGQSS-GGSISYGDRKP---FDWNS 117
           T+   +   R +Q++N+   L +S G P++ MGDE G +  G + SYG       F W+ 
Sbjct: 27  TDDASIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDSAINFFLWDQ 86

Query: 118 LSTGFGIQMTQFISFLSSLRTRWSD-VLQKRNFLKEENIDWYGTDQSPPRWEDPSCKFLA 176
           L    G     F  F ++++ R +   L   NFL E  I W+  +     W++   KFLA
Sbjct: 87  LDARKG---DHFRFFSNAIKYRHAHKTLSHENFLSENEITWHEDN-----WDNYESKFLA 138

Query: 177 MTLRTKSSGNLFMAFNAADQSESVILPQLPEGMTWLRLVDTALPFPGFFSNDGEPVVEQM 236
            TL  KS G++++AFNA D     +LP  P    W R+VDT L  P     DG P + + 
Sbjct: 139 FTLHDKSGGDIYLAFNAHDYFLKALLPTPPTKRKWFRVVDTNLQSPDDIVLDGVPGIGE- 197

Query: 237 AELIVYGMKSHSCILFEAR 255
                Y +  +S IL EA+
Sbjct: 198 ----TYSIAPYSSILLEAK 212


>IMGA|Medtr4g160980.1 Alpha amylase, catalytic region; ;
           chr04_pseudomolecule_IMGAG_V3 40981878-40992441 E
           EGN_Mt090430 20090702
          Length = 788

 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 123/271 (45%), Gaps = 37/271 (13%)

Query: 8   LCGSGDIFSSGTRSRLFLFNFIARNSGLPLVDLVSFSS-----------DELASELCWNC 56
           +CGS +++  G R      N +  + G  L DLV++++           D       WNC
Sbjct: 519 ICGSPNLYQGG-RKPWNSINLVCAHDGFTLADLVTYNNKHNLPNGEDNNDGENHNSSWNC 577

Query: 57  GEEGPTNKIPVLERRLKQIRNYLFILYVSLGVPVLNMGDECGQSSGGS---------ISY 107
           GEEG      V + R +Q+RN+   L VS GVP++ MGDE G + GG+         ++Y
Sbjct: 578 GEEGEFVSASVKKMRKRQMRNFFLSLMVSQGVPMIFMGDEYGHTKGGNNNTYCHDNYLNY 637

Query: 108 GDRKPFDWNSLSTGFGIQMTQFISFLSSLRTRWSDVLQKRNFLKEENIDWYGTDQSPPRW 167
                F W+           +F   L+  R    + L   +F   E + W+G     P W
Sbjct: 638 -----FRWDKKEES-SSDFFRFCRLLTKFRQE-CESLGLDDFPTSERLQWHGHFPVTPDW 690

Query: 168 EDPSCKFLAMTLRTKSSGNLFMAFNAADQSESVILPQLPEGMTWLRLVDTALPFPGFFSN 227
            + S +F+A TL     G +++AFN +    ++ LP+ P G  W  LVDT+   P  F  
Sbjct: 691 SE-SSRFVAFTLMDLVKGEVYVAFNTSHLPFTITLPERP-GYRWEPLVDTSKKAPYDFLT 748

Query: 228 DGEP----VVEQMAELI---VYGMKSHSCIL 251
              P     ++Q A+ +   +Y M S+S I+
Sbjct: 749 PDLPGRDIAIQQYAQFLDANMYPMLSYSSII 779