Jatropha Genome Database

JcCA0294231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294231.10 + phase: 0 
         (257 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g086780.1 PAC, putative chr01_pseudomolecule_IMGAG_V3...   290   4e-79
IMGA|Medtr1g086760.1 hypothetical protein chr01_pseudomolecule_I...    54   1e-07

>IMGA|Medtr1g086780.1 PAC, putative chr01_pseudomolecule_IMGAG_V3
           17286725-17282052 E EGN_Mt090430 20090702
          Length = 320

 Score =  290 bits (743), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 163/252 (64%), Positives = 185/252 (73%), Gaps = 4/252 (1%)

Query: 10  EWQAEQRKKSKXXXXXXXXXXXXXXXXXXXXXXXGLRLKGYPEEDVKKARKLVSSFIRXX 69
           EWQA QR+K+K                       G+RLK YPEEDV+KARKL+SSFIR  
Sbjct: 69  EWQARQREKTKELHRRRREEEEEEERKIEEYREVGMRLKEYPEEDVRKARKLISSFIRAA 128

Query: 70  XXXXXXXXXXXXXXXLNELVLMVIWNRLDLARRDDEKDAVRSLDLLYRRVEMEILKREAT 129
                          L ELVLMVIWNRLDLARRDDEKDA+RSLDLLYRRVE EILKREAT
Sbjct: 129 EEVEEKIEEAAERGELTELVLMVIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKREAT 188

Query: 130 PAMRLLNDLLNMHDGFDDEGWLKECKKCMIDTFPREDPFSILVPAG---FDIDKHQGPLQ 186
           PAMRLLNDLL M+DGF+ + WLK+CKK MIDTFPREDP+SILVP G   FDID+H GPL+
Sbjct: 189 PAMRLLNDLLIMYDGFNFDEWLKKCKKIMIDTFPREDPYSILVPPGFESFDIDQHHGPLR 248

Query: 187 PPLEADD-VLLRVDFVREVDALLQEVRHEPSEEQNIEGFDPESVASKLKQQEKQRTIRKV 245
           P LE DD  LLR+DFVREVD LLQ+VR E  EE+N +  + ESVA+ LKQQEKQ+TIR+V
Sbjct: 249 PSLEVDDNTLLRIDFVREVDELLQDVRSEQDEEENEQELNAESVANILKQQEKQQTIRQV 308

Query: 246 EALLDLAINLKW 257
           EALLDLAI+L W
Sbjct: 309 EALLDLAISLNW 320


>IMGA|Medtr1g086760.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 17272131-17271919 F
           EGN_Mt090430 20090702
          Length = 70

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 39/49 (79%)

Query: 192 DDVLLRVDFVREVDALLQEVRHEPSEEQNIEGFDPESVASKLKQQEKQR 240
           D+ LLRV+FVREVD LLQEV  E  EE+N   F P++VA++LKQQEKQ+
Sbjct: 19  DNTLLRVNFVREVDELLQEVCSEHDEEENEHEFSPDTVANRLKQQEKQQ 67