Jatropha Genome Database

JcCA0294151.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294151.20 - phase: 2 /partial
         (64 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g111270.1 Homoserine dehydrogenase chr03_pseudomolecu...    99   6e-22

>IMGA|Medtr3g111270.1 Homoserine dehydrogenase
           chr03_pseudomolecule_IMGAG_V3 28220584-28225725 F
           EGN_Mt090430 20090702
          Length = 376

 Score = 98.6 bits (244), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 51/64 (79%)

Query: 1   CEVGIQELPKNSALGRLRGSDNVLEIYSRCYNEQPLVIQXXXXXXXXXXXXVLADILDIQ 60
           CEVGIQELPKNSALGRLRGSDNVLE+Y+RCY+ QPLVIQ            VLADI+DIQ
Sbjct: 313 CEVGIQELPKNSALGRLRGSDNVLEVYTRCYSNQPLVIQGAGAGNDTTAAGVLADIVDIQ 372

Query: 61  DLFP 64
           DLFP
Sbjct: 373 DLFP 376