Jatropha Genome Database

JcCA0293441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0293441.10 - phase: 0 /pseudo/partial
         (69 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g126150.1 Alba, DNA/RNA-binding protein chr02_pseudom...    91   1e-19
IMGA|Medtr5g007110.1 Uncharacterised conserved protein UCP030333...    66   5e-12

>IMGA|Medtr2g126150.1 Alba, DNA/RNA-binding protein
          chr02_pseudomolecule_IMGAG_V3 30499152-30501662 E
          EGN_Mt090430 20090702
          Length = 136

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/62 (80%), Positives = 52/62 (83%), Gaps = 3/62 (4%)

Query: 1  MEEITEGVNNVTITG---GDLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGM 57
          ME ITEGVNN+ I      D +KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGM
Sbjct: 1  MEGITEGVNNININNNNNSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGM 60

Query: 58 GI 59
           I
Sbjct: 61 AI 62


>IMGA|Medtr5g007110.1 Uncharacterised conserved protein UCP030333,
          DNA/RNA-binding Alba-related
          chr05_pseudomolecule_IMGAG_V3 981624-980078 E
          EGN_Mt090430 20090702
          Length = 138

 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 42/59 (71%), Gaps = 3/59 (5%)

Query: 4  ITEGVNNVTITGGDLHKKN---RIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMGI 59
          +T    NV I GG++ K+    RIQVS TKKPLFFY+N+AK++++  N+VEL ALG  I
Sbjct: 19 LTGATKNVKINGGEIEKEKKIYRIQVSKTKKPLFFYLNIAKKHLKLDNDVELCALGTAI 77